An integrated method for targeted Oxford Nanopore sequencing and automated bioinformatics for the simultaneous detection of bacteria, fungi and ARGs

• Acinetobacter bauma...
• Acremonium guillematii
• Aspergillus flavus
• Aspergillus fumigatus
• Bacillus cereus
• Brucella melitensis
• Burkholderia stabilis
• Candida albicans
• Candida tropicalis
• Cladosporium haloto...
• Cryptococcus neofor...
• Cunninghamella sp
• ELIXIR ENA
• Enterobacter hormae...
• Enterococcus faecalis
• Enterococcus faecium
• Escherichia coli
• Gulosibacter bifidus
• Klebsiella aerogenes
• Klebsiella pneumoniae
• Lichtheimia blakesl...
• Mycobacterium tuber...
• Proteus mirabilis
• Pseudomonas aeruginosa
• Salmonella enterica
• Salmonella enterica...
• Salmonella enterica...
• Sarocladium kiliense
• Serratia marcescens
• Shigella boydii
• Shigella flexneri
• Sporothrix globosa
• Staphylococcus aureus
• Stenotrophomonas ma...
• Streptococcus pneum...
• Streptococcus pyogenes
• Trichosporon asahii
• Vibrio cholerae
• blood metagenome
• human metagenome
• metagenome
• missing

Identifier
Source	https://data.blue-cloud.org/search-details?step=~012006CA3A218D648F324A584AEF06471B801B3D89B
Metadata Access	https://data.blue-cloud.org/api/collections/006CA3A218D648F324A584AEF06471B801B3D89B

Provenance
Instrument	MinION; OXFORD_NANOPORE
Publisher	Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Contributor	HaystackAnalytics Pvt. Ltd.
Publication Year	2024
OpenAccess	true
Contact	blue-cloud-support(at)maris.nl

Representation
Discipline	Marine Science
Temporal Coverage Begin	2021-09-20T00:00:00Z
Temporal Coverage End	2023-06-12T00:00:00Z