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Clinical isolate sequencing
Sequencing of several clinical isolates of different species -
Metagenomes containing bacteria from positive blood culture broths in patient...
Metagenomes containing bacteria from positive blood culture broths in patients with sepsis -
Drakenstein12internal
This is a large scale project with the sequencing co-funded by collaborators at the University of Cape Town and WT Core (I2818). This is a project aimed at deepening our... -
Two weeks in the World 2020
The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units... -
CDC HAI-Seq Gram-negative bacteria
CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria -
Evaluating Nanopore-based bacterial variant calling
Benchmark various nanopore-based variant callers on 14 different species. Samples are sequenced on the latest (September 2023) R10.4.1 Nanopore flowcells and Illumina. Ground... -
Bacterial isolates from intensive care units
Whole genome sequencing of bacterial isolates over a 1-year period from a hospital's intensive care units. -
BactID
Bacterial identification run in house at UCLA -
RNA Atlas of Bacterial Human Pathogens Uncovers Stress Dynamics Linked to Bac...
Pathogenic bacteria encounter a variety of stressful host environments during infection. Their responses to meet these challenges protect them from deadly damages and aid in... -
Hapalochlaena maculosa Genome sequencing and assembly
This project sequenced and annotated the genome of the southern blue-ringed octopus (Hapalochlaena maculosa) with the aim of understanding the evolution of this unique genus... -
Clinical evaluation of mNGS in unbiased pathogens diagnosis of UTIs
Advance the implementation of mNGS in pathogen diagnosis in clinics. -
Bacteria and yeast pathogens sequenced from human blood culture specimens
Bloodstream infection is a major cause of morbidity and mortality worldwide. Early pathogen detection and administration of appropriate antimicrobial therapy substantially... -
Viridans_Streptococci___A_genera_l__approach_to_surveillance
A collection of Viridans isolates covering 24 taxonomically designated species, including Type strains, all those analysed previously using MLSA, those strains utilized for sera... -
FDA-ARGOS is a database with public quality-controlled reference genomes for ...
<b>FDA-ARGOS project update</b> <p>FDA-ARGOS database updates may help researchers rapidly validate diagnostic tests and use qualified genetic sequences to... -
Bloodstream_surveillence_across_Africas
A survey across centres in Africa into the main bacterial causes of bloodstream infections. These data are part of a pre-publication release. For information on the proper use...