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Candida auris
WGS of Candida auris isolated in Canada -
ChIP-seq of biofilm master regulators in four species of Candida
The purpose of this experiment was to identify the genes bound by the biofilm master regulators (Bcr1, Brg1, Efg1, Ndt80, Rob1 and Tec2) in Candida albicans, C. dubliniensis, C.... -
Tobacco target spot-disease severity-ITS
Tobacco target spot-disease severity -
Humans and other commonly used model organisms are resistant to cycloheximide...
Ribosome profiling measures genome-wide translation dynamics at sub-codon resolution. Cycloheximide (CHX), a widely used translation inhibitor to arrest ribosomes in these... -
Genome-wide identification of natural RNA aptamers in prokaryotes and eukaryotes
RNAs are well-suited to act as cellular sensors that detect and respond to metabolite changes in the environment due to their ability to fold into complex structures. Here, we... -
FungID
Fungal identification -
Dual RNA-Seq of host-pathogen interaction between human and major Candida pat...
We studied the host- pathogen interactions between human epithelial cell line A451 with 4 main Candida pathogens (C. albicans, C. glabrata, C. parapsilosis and C. tropicalis)... -
Transcriptome-wide mapping reveals widespread dynamic regulated pseudouridyla...
Pseudouridine is the most abundant modification occurring on RNA, yet with the exception of a few well-studied RNA molecules little is known about the modified positions and... -
All fungus besides Candida auris Raw sequence reads
Fungus sequenced at Nevada State Public Health Lab that are not Candida auris -
RNA structure probing - C. albicans, C. Parapsilosis and NORAD molecules
nextPARS experiment with C. albicans, C. Parapsilosis and NORAD molecules -
High throughput gene expression profiling of yeast colonies with microgel-cul...
We report the development and application of isogenic colony sequencing to profile heterogeneity among yeast colonies. We profiled transcriptomes of the opaque-white switching... -
C. albicans SC5314 and A. fumigatus Af293 Raw sequence reads
C. albicans SC5314 and A. fumigatus Af293 transcriptome -
Whole genome sequencing of clinical oral yeast isolates
Oral yeast Whole genome sequencing -
Candida ATCC WGS
Candida ATCC WGS -
Genome-wide nucleosome position data for 3 yeast species
Genome-wide nucleosome position data for wildtype and mutant strains in S. cerevisiae, C. albicans, and S. pombe Overall design: Illumina sequencing of mononucleosomal DNA... -
Y1000+ Saccharomycotina yeasts genome sequencing and assembly
Genomes from the Y1000+ project aiming at sequencing the genomes of all the known Saccharomycotina yeasts -
One Day in Denmark 2018 point prevalence survey on fungi
Candida albicans and Candida glabrata are fungal opportunistic pathogens with increasing incidence in worldwide, and higher than expected prevalence in Denmark. We whole-genome... -
mDrop-seq: Massively parallel single-cell RNA-seq of Saccharomyces Cerevisiae...
We present microbial Drop-seq or mDrop-seq, a high-throughput scRNA-seq technique that is used on two yeast species, Saccharomyces cerevisiae, a popular model organism and... -
Linked machine learning models improve species classification of fungi when u...
The increased usage of long read sequencing has not been matched with publicly available databases suited for error-prone long reads when applied to metabarcodes. We address... -
Whole genome sequencing to study of pathogenic Candida strains
Aim of this project is to identify biomarkers associated with persistance of Candida strains in the host and with virulence/pathogenicity of the different strains