17 datasets found

High-quality (HQ) reference genomes are essential for understanding the phylogeny and function of uncultured microbes in complex microbial ecosystems. However, existing...

This study aims to detect pathogens in bronchoalveolar lavage fluid (BALF) from SCAP patients using both metagenomics extended-spectrum pathogenic microorganism sequencing...

Shigella species Genome sequencing and assembly

This SRA project contains raw sequencing data for WGS, Tn-Seq, and whole-transcriptome RNA-Seq of massively expanded synthetic genomes - and associated background strains -...

The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units...

CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria

The isolates from feces in Felidae

Pathogenic bacteria encounter a variety of stressful host environments during infection. Their responses to meet these challenges protect them from deadly damages and aid in...

Escherichia coli and Pseudomonas simiae transcription factor binding sites mapped in 48 bacterial genomes

We used mNGS to detect pathogens in matched transbronchial lung biopsy (TBLB), bronchoalveolar lavage fluid (BALF), and bronchial needle brushing (BB) specimens from 39 patients...

http://www.sanger.ac.uk/resources/downloads/bacteria/ This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the...

University of California at Davis 100K Pathogen Genome Project. Major bacterial pathogens in the United States and around the world, including Salmonella enterica, E. coli,...

Sequences associated with validation of sequencing reagents and platforms

Bacteria with public health implications due to virulence or antimicrobial resistance. Many of these bacteria were associated with outbreaks or have abnormal characteristics....

<b>FDA-ARGOS project update</b> <p>FDA-ARGOS database updates may help researchers rapidly validate diagnostic tests and use qualified genetic sequences to...

Nucleotide sequences including G+C contents and oligonucleotide compositions tend to be more similar between plasmid and hosts' chromosome than between the plasmid and non-host...