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Clinical isolate sequencing
Sequencing of several clinical isolates of different species -
CDC HAI-Seq Enterococcus species
CDC’s Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Enterococcus spp. We have implemented a standard scheme for isolate/sample... -
Recovery of nearly 8,000 uncultivated bacterial and archaeal genomes substant...
Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing... -
Metagenomes containing bacteria from positive blood culture broths in patient...
Metagenomes containing bacteria from positive blood culture broths in patients with sepsis -
A StrainAtlas of the human gut microbiome
A cultured isolate collection from a broad human population -
Drakenstein12internal
This is a large scale project with the sequencing co-funded by collaborators at the University of Cape Town and WT Core (I2818). This is a project aimed at deepening our... -
Two weeks in the World 2020
The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units... -
Single-molecule detection of N6-methyladenine in microbial reference materials
N6-methyladenosine (m6A) is among the most common bacterial base modifications. Detection at single base resolution is possible using single-molecule sequencing with PacBio and... -
MetaPDOcheese 4: Whole genome of bacterial isolates from cheeses and milks
The genomic dataset consists of 373 bacterial strains spanning 3 phyla (172 Actinomycetota, 6 Bacillota and 195 Pseudomonadota), 17 genera and 47 species, isolated from French... -
Ultra-deep, long-read nanopore sequencing of mock microbial community standards
Ultra-deep, long-read nanopore sequencing of mock microbial community standards -
Staphylococcus aureus subsp. aureus 15981 Transcriptome or Gene expression
Complete transcriptome analysis of Staphylococcus aureus. -
The isolates from feces in Felidae
The isolates from feces in Felidae -
Bacterial isolates from intensive care units
Whole genome sequencing of bacterial isolates over a 1-year period from a hospital's intensive care units. -
BactID
Bacterial identification run in house at UCLA -
RNA Atlas of Bacterial Human Pathogens Uncovers Stress Dynamics Linked to Bac...
Pathogenic bacteria encounter a variety of stressful host environments during infection. Their responses to meet these challenges protect them from deadly damages and aid in... -
Genomic_and_bacterial_blueprint_of_the_human_gastrointestinal_microbiota
Here we present a comprehensive collection of 737 whole-genome sequenced bacterial isolates from humans to understand the blueprint of human gastrointestinal microbiota. This... -
Collection of 3,087 bacterial metagenome-assembled genomes recovered from met...
Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set... -
Vibrio parahaemolyticus isolated from shrimp pond
Vibrio parahaemolyticus isolated from shrimp pond -
Tracking_the_dynamics_of_AMR_genes_within_enteric_bacterial_communities_in_pi...
The aim of the proposed research is to define the nature and frequency of transfer of antimicrobial resistance (AMR) genes between pathogenic and commensal bacteria within their...
