Metagenomic analysis of virome cross-talk between cultivated Solanum lycopersicum and wild Solanum nigrum

DOI

We selected tomato (Solanum lycopersicum) and european black nightshade (Solanum nigrum) as a pair of related crop-weed species to study the diversity and potential flow of viral populations using high throughput sequencing (HTS) based metagenomics. A total of 20 libraries were prepared and sequenced on an Illumina HiSeq 3000 system at the GenoToul platform (INRA Toulouse, France).

Identifier
DOI https://doi.org/10.15454/S486RR
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.15454/S486RR
Provenance
Creator Ma, Yuxin; Marais, Armelle; Lefebvre, Marie; Faure, Chantal; Candresse, Thierry
Publisher Recherche Data Gouv
Contributor Candresse, Thierry
Publication Year 2019
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Candresse, Thierry (INRA - Institut National de la Recherche Agronomique)
Representation
Resource Type Dataset
Format application/gzip
Size 134236782; 150415673; 199026760; 235005476; 322384444; 397916556; 137005591; 160863112; 56561940; 62139197; 98007115; 102261095; 89706557; 96670179; 84885955; 92039947; 183979364; 224035586; 143253821; 173654408; 102178326; 118310469; 113321651; 132298832; 142978224; 162810479; 99875040; 113940607; 143726655; 170287944; 99055539; 119474390; 93449567; 110151843; 127208800; 145385697; 123847644; 141924966; 94610547; 108665104
Version 1.0
Discipline Life Sciences; Biology; Omics; Plant Science