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Replication Data for: The reindeer circadian clock is rhythmic and temperatur...
The purpose of the publication was to investigate the molecular circadian clock in an Arctic context by contrasting reindeer with mouse fibroblast cell cultures. Cell cultures... -
Scripts and data for: Microorganisms in subarctic soils are depleted of ribos...
This dataset contains all data files and R-scripts needed to replicate the analyses presented in the manuscript: "Microorganisms in subarctic soils are depleted of ribosomes... -
GraphML file for homologues and reconstructed ancestors of arylsulfatases and...
Protein sequence network for homologues of arylsulfatases and phosphonate monoester hydrolases, including reconstructed ancestral sequences from a maximum-likelihood... -
Deep enzymology data related to Dukatz et al.: Complex DNA sequence readout m...
Experimental procedures: Libraries of double stranded DNA substrates with CpG, CpH or CpN sites in randomized sequence context were methlyated by DNMT3B. Reactions were stopped... -
Seed sequences for the Glycoside Hydrolase 19 Engineering Database
Query sequences for the individual BLAST searches used to initialize the Glycoside Hydrolase 19 Engineering Database (GH19ED, https://gh19ed.biocatnet.de/). -
Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database
A starting alignment was built if other sequences with a known PDB structure were available, by performing a GH19 domain structure-based alignment generated through the mmaker... -
GraphML files for protein sequence networks of glycoside hydrolase 19 homologues
GraphML files for undirected weighted graphs with nodes that represent protein sequences of glycoside hydrolase 19 homologues. Protein sequences were clustered by a threshold of... -
Conserved positions in expansin homologues
Conserved positions in the N- and C-terminal expansin domains of different groups from the Expansin Engineering Database (occurring in at least 70% of the annotated sequence... -
Expansin homologues in actinobacterial genomes from South Africa
Hit sequences for putative expansins (or expansin domains) are reported from an exemplary genome screening. Five actinobacterial genomes were selected to show the application of... -
Occurrence of expansins in the tree of life
Comparison between expansins found in the Expansin Engineering Database (ExED) and literature. -
Deep enzymology data related to Adam et al.: DNA sequence-dependent activity ...
Methylation of long hemimethylated DNA substrates: Methylation of the 349 bp long hemimethylated substrate with DNMT1 was carried out in 1X methylation buffer (100 mM HEPES, 1... -
Deep enzymology data related to Adam et al.: DNA sequence-dependent activity ...
Methylation of random flank substrates: Libraries of double stranded DNA substrates with unmethylated or hemimethylated CpG sites in randomized sequence context were methlyated... -
Deep enzymology data related to Gao et al.: Comprehensive structure-function ...
Experimental procedures: Libraries of double stranded DNA substrates with CpG, CpH or CpN sites in randomized sequence context were methlyated by DNMT3A or DNMT3B. Reactions... -
Expansin domains in CBM63 sequences
The occurrence of N- and C-terminal expansin domains in CBM63 sequences from the CAZy database. Protein sequences are represented by NCBI accessions. Expansin domains were... -
GraphML files for protein sequence networks of expansin homologues
GraphML files for undirected weighted graphs with nodes that represent protein sequences of expansin homologues. Protein sequences were clustered by a threshold of sequence... -
Profile hidden Markov models of the ExED
Profile hidden Markov models and their underlying multiple sequence alignments for the N- and C-terminal protein domains of expansins. A profile hidden Markov model (HMM) was... -
Query sequences for the update of the ExED
Query sequences for the individual BLAST searches used to update the Expansin Engineering Database (ExED, https://exed.biocatnet.de/). -
Query sequences for the update of the LccED
Query sequences for the individual BLAST searches used to update the Laccase and Multicopper Oxidase Engineering Database (LccED, https://lcced.biocatnet.de/). -
3D Cryo-FIB SEM - Mallomonas Dataset
Dataset of raw and image processed 3D Cryo-FIB SEM data recorded from Mallomonas cells. -
The modular structure of alpha/beta-hydrolases: similarity of the N- and C-te...
To analyse the structural similarities of the N- and C-terminal domains, representative protein structures of each oxyanion hole type from the proteins of alpha/beta-hydrolase...