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NLGenomeSweeper
NLGenomeSweeper is a command line bash pipeline that searches a genome for NBS-LRR (NLR) disease resistance genes based on the presence of the NB-ARC domain using the consensus... -
TE-related genes: annotation, characterisation, and expression.
This dataset contains the gene analysis workflow used to evaluate the genes expression and to find the genes potentially involved in the TEs transposition machinery. Also, it... -
Raw data - resistance Iledher under multiinfection
Raw experimental data on resistance of potato cultivar Iledher to Globodera pallida under multiinfections -
M. incognita candidate effector proteins
Accession numbers of M. incognita candidate effectors. These proteins are predicted to be secreted based on the presence of a signal peptide for secretion and absence of... -
R scripts and datas for the analysis of Lepidoptera feeding bioassays
Rscripts, raw datas, and documentation associated to the statistical analysis of the data produced by the Sanane Lepidoptera feeding bioassay. -
R scripts and training data set for NGS-based resistance diagnosis
R scripts and training data set for NGS-based resistance diagnosis -
Sporangia size and number relationship for Phytophthora infestans isolates
Phenotypic data (sporangia size and sporangia number) of P. infestans isolates obtained in three infection experiments conducted under controlled conditions. -
DNA metabarcoding of foliar fungal communities in an untreated vineyard
This sequence dataset (FASTQ format) was obtained by metabarcoding fungal communities of 20-days old leaves in an untreated vineyard located in INRA Vilenave d'Ornon (France).... -
Meloidogyne incognita Interproscan annotation
Interproscan annotation on the 43,718 predicted proteins in the genome of the root-knot nematode Meloidogyne incognita (Blanc-Mathieu et al. 2017, PLoS Genetics). vesrion used:... -
FRIM - Fruit Integrative Modelling
The project aimed to build a virtual tomato fruit that enables the prediction of metabolite levels given genetic and environmental inputs, by an iterative process between... -
Gene Ontology enrichment in PPN-specific and horizontally acquired proteins
We used a hypergeometric test within the FUNC program (Prüfer et al., 2007) to determine whether certain GO terms assigned via InterproScan annotation were significantly... -
Data from: A high-quality grapevine downy mildew genome assembly reveals rapi...
This dataset includes analysis files for the paper "A high-quality grapevine downy mildew genome assembly reveals rapidly evolving and lineage-specific putative host adaptation... -
DNA metabarcoding of a mock community of 189 fungal strains associated to pla...
This sequence dataset (FASTQ format) was obtained by metabarcoding an artificial (mock) fungal community. The ribosomal internal transcribed spacer region 1 (ITS1) was amplified... -
Shallots virome
In order to elucidate the etiology of a novel disease on shallots in France, double-stranded RNAs from four symptomatic plants and two asymptomatic plants were analyzed using... -
Enriched gene ontology terms in upregulated genes at the transition from adul...
Analysis of differentially represented (over and under) Gene Ontology (GO) terms in the genes showing significant up-regulation at the transition between the eggs and the... -
R scripts for "Pauvert et al. 2019. Microbial association networks give relev...
R scripts and datafiles used to infer microbial association networks from metabarcoding data of grapevine foliar samples infected or not by powdery mildew (Erysiphe necator). R... -
Enriched gene ontology terms in upregulated genes at the transition from J3-J...
Analysis of differentially represented (over and under) Gene Ontology (GO) terms in the genes showing significant up-regulation at the transition between the J3-J4 mixed stages... -
Viral metagenomic data of crop and wild plant/weed species in horticultural c...
Using purified double-stranded RNAs (dsRNAs) and high-throughput sequencing (HTS) on a 454 pyrosequencing platform, we analyzed the metavirome associated with crops and... -
Metadata from common gardens of the Forest Genetics Network for Research and ...
GEN4X (forest genetics network for research and experimentation) is a French network of forest tree common gardens which compare genetic units of varied types (species,... -
Genome assembly and annotation of Plasmopara viticola, the grapevine downy mi...
This dataset includes the assembly and annotation of the Plasmopara viticola genome (INRA-PV221 isolate), following genome sequencing using PacBio long reads at deep coverage....