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Matches of Minc repeat on Minc contigs
Results of a BLASTn search with the M. incognita repeat as a query against the M. incognita contigs with an e-value threshold of 1e-35. Positions of the composite repeats, their... -
Transcripts containing Minc telomeric repeats and their matches on the genome
We assembled the transcriptomes of four M. incognita developmental life stages RNA-seq datasets using TRINITY. W= egg, J2= pre-parasitic second stage juveniles, J3= a mix of J3... -
Matches of Mare repeat on Mare contigs
Results of a BLASTn search with the Mare repeat as a query against the M. arenaria contigs with an e-value threshold of 1e-35. Positions of the composite repeats, their... -
Clustering of telomeric motif-1 occurences and comparison with A/B subgenomes
All motif-1 occurrences of the 3 species (Minc, Mjav, Mare) were clustered at 99.9% identity using CD-HIT and clustering results were cross-referenced with A/B subgenomes... -
Matches of Minc repeat on Mluci contigs
Results of a BLASTn search with the M. incognita repeat as a query against the M. luci contigs. Positions of the composite repeats, their orientation and presence / absence of... -
FISH evidence for terminal localization of the repeats
Animated images confirming the terminal position of M. incognita repeats on chromosomes. -
Predicted Genes Overlapping Minc Telomeres
Twelve predicted genes in M. incognita overlap Minc telomeric repeat arrays at contig extremities. For each gene we provide a screenshot of the corresponding region in JBrowse... -
Matches of Mjav repeat on Mjav contigs
Results of a BLASTn search with the Mjav repeat as a query against the M. arenaria contigs with an e-value threshold of 1e-35. Positions of the composite repeats, their... -
Meloidogyne javanica gene predictions
Results of EuGene annotation on the M. javanica genome. Predictions of gene models in M. javanica genome were done with the fully automated pipeline EuGene-EP version 1.6.5... -
Distribution of telomeric repeats and proteins across nematode species
Distribution of the canonical (TTAGGC)n telomeric repeats and telomere-associatted proteins across 69 nematode species. Sources of genomes and predicted proteomes as well... -
Meloidogyne incognita gene predictions
Results of EuGene annotation on the M. incognita nuclear genome contigs. Predictions of gene models in M. incognita, M. javanica, M. arenaria and M. luci genomes were done with... -
Localization and analysis of telomeres in M. incognita chromosomes via FISH
Fluorescent in situ hybridization (FISH) performed on isolated females from infected tomato roots using probe specific to composite telomeric repeats (green) and chromosomes... -
Meloidogyne luci gene predictions
Results of EuGene annotation on the M. luci genome. Predictions of gene models in M. incognita, M. javanica, M. arenaria and M. luci genomes were done with the fully automated... -
M. incognita assembled transcriptomes
Assemblies of M. incognita transcriptomes from four developmental life stages. We retrieved Minc RNA-seq Illumina data of four developmental life stages (eggs, pre-parasitic J2,... -
Distribution of G4s and Minc repeats on M. incognita contigs
The density of Minc composite repeats per 100kb window is represented by a color gradient with positive values (red) indicating a density in the sense strand and negative values... -
Global statistics of the orthofinder analysis
General statistics of the orhofinder analysis on the 63 species (including 61 nematodes). Number of orthogroups, of genes in orthogroups etc... -
Orthofinder results: raw and annotated orthogroups and list of unassigned pro...
Raw and annotated Orthofinder results on 61 nematode and 2 tardigrade (used as outgroup) species. The annotated list of species with description of the abbreviated names is... -
M. incognita protein-coding genes expression patterns
M. incognita protein-coding genes expression values across 4 life stages in triplicates. Life stages are as follows: - W: eggs - J2: pre-parasitic infective juveniles - J3:... -
PPN-specific candidate effectors expressed in endophytic phases of M. incogni...
Annotated list of M. incognita candidate effector proteins that fulfil these criteria: - the proteins are PPN-specific according to orhtofinder and return no significant hit... -
Horizontal gene transfer candidates in M. incognita
Analysis of horizontal gene transfer (HGT) candidates on the M. incognita predicted proteins from (Blanc-Mathieu et al. 2017), using Alienness (Rancurel et al. 2017) on a...
