Transcripts containing Minc telomeric repeats and their matches on the genome

DOI

We assembled the transcriptomes of four M. incognita developmental life stages RNA-seq datasets using TRINITY. W= egg, J2= pre-parasitic second stage juveniles, J3= a mix of J3 and J4 endophytic staged, F= adult female. We searched for the presence of the motifs constituting the Minc telomeric repeat. Transcripts that contained at least one of the 3 Minc telomeric motifs were mapped to the genome using GMAP.

Identifier
DOI https://doi.org/10.57745/XWLWCJ
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.57745/XWLWCJ
Provenance
Creator Danchin, Etienne
Publisher Recherche Data Gouv
Contributor Danchin, Etienne
Publication Year 2023
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Danchin, Etienne (INRAE)
Representation
Resource Type Dataset
Format text/tab-separated-values
Size 38968
Version 1.0
Discipline Agriculture, Forestry, Horticulture; Geosciences; Life Sciences