Clustering of telomeric motif-1 occurences and comparison with A/B subgenomes

DOI

All motif-1 occurrences of the 3 species (Minc, Mjav, Mare) were clustered at 99.9% identity using CD-HIT and clustering results were cross-referenced with A/B subgenomes assignments. Sheet 1: The 52 clusters with information of the species and contig of origin as well as positions on the contigs.
Sheet 2: Distribution of Minc motif-1 occurrences across the clusters with information of A/B subgenome of origin.
Sheet 3: Sheet 2: Distribution of Mare motif-1 occurrences across the clusters with information of A/B subgenome of origin.
Sheet 4: Distribution of Mjav motif-1 occurrences across the clusters with information of A/B subgenome of origin.
Sheet 5: Cross-species motif-1 occurrences across the clusters with information of A/B subgenome of origin.
Sheet 6: Distribution of species per cluster

Identifier
DOI https://doi.org/10.57745/RZAHFB
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.57745/RZAHFB
Provenance
Creator Danchin, Etienne
Publisher Recherche Data Gouv
Contributor Danchin, Etienne
Publication Year 2023
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Danchin, Etienne (INRAE)
Representation
Resource Type Dataset
Format text/tab-separated-values
Size 360788
Version 1.0
Discipline Agriculture, Forestry, Horticulture; Geosciences; Life Sciences