The density of Minc composite repeats per 100kb window is represented by a color gradient with positive values (red) indicating a density in the sense strand and negative values (blue) indicating a density on the reverse complement strand. Gray triangles above bars indicate regions of the contigs where less than 100% of the repeats are on the same strand. The heights of bars in the histogram represent the density of G4-quadruplex forming regions in the same windows. Only contigs containing repeat arrays and shorter than the N80 value are represented. The same figure for contigs with a size above or equal to N80 is available as Figure 3 in the manuscript.