Twelve predicted genes in M. incognita overlap Minc telomeric repeat arrays at contig extremities. For each gene we provide a screenshot of the corresponding region in JBrowse and the magnification was set to show the entire gene. From top to bottom:
- First track: predicted gene by EuGene
- Second track: predicted repeat by EDTA
- Last track: coverage by RNA-seq data
For the RNA-seq data, we have used a mapping strategy that allows representation of highly multi-mapped reads to be able to visualize transcribed telomeric repeats.
The regularly repeated arrays of RNA-seq peaks correspond to the telomeric repeat which is found in the Illumina data.