Genotypic description of the near isogenic lines (HIFs) used for QTL validation and significance of the observed segregating phenotypes (Marchadier, Hanemian, Tisné et al., 2019)

DOI

Each row represents a single HIF and the genotype of the F7 RIL it originates from is indicated along the chromosomes with RIL ID, markers and genotypic conventions from Publiclines http://publiclines.versailles.inra.fr/rils/index (i.e. 'A' = Col allele; 'B' = alternate parental allele; 'C' = heterozygous). The region highlighted in yellow is the segregating region that is tested in the HIF family through several fixed lines for each parental allele. For each of the 3 growth traits (Compactness29 = rosette compactness 29 days after sowing; PRA29 = Projected Rosette Area 29 days after sowing; RER16-29 = Relative rosette Expansion Rate between days 16 and 29 after sowing) in 2 conditions ('WW' = Well Watered / 'WD' = Water Deficit), whenever significant, the p-value of the comparison between allelic lines ('Pval') and the direction of the allelic effect ('sign' calculated as [Col-Xxx] where Xxx is the alternate parental allele) are indicated in the last columns of the table.

Identifier
DOI https://doi.org/10.15454/EORHL8
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.15454/EORHL8
Provenance
Creator Loudet, Olivier ORCID logo
Publisher Recherche Data Gouv
Contributor Loudet, Olivier
Publication Year 2018
Funding Reference ERC ERC-2009-StG-243359 ; ANR ANR-09-BLAN-0366
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Loudet, Olivier (INRA - Institut National de la Recherche Agronomique)
Representation
Resource Type Dataset
Format text/tab-separated-values
Size 49779
Version 1.1
Discipline Geosciences; Life Sciences; Ecology; Biology; Omics