Data associated to the paper "A genomic map of climate adaptation in Mediterranean cattle breeds" (Flori et al., Molecular Ecology, Epub 2018 Dec 29. doi: 10.1111/mec.15004)

Dataset

DOI

This dataset consists of genotypes of 640 animals for 39921 variants (SNPs). Animals belong to 21 Mediterranean cattle populations. The compressed archive contains two files (in plink format): i) a genotyping data file named "MED_set.ped" (640 rows, 79848 columns) that contains, for each individual, six information columns (breed ID, animal ID and four columns with data coded 0 or U) and the genotypes (alleles 1 and 2) for the 39921 SNPs (ACGT, Illumina TOP format) ; and ii) a map file named "MED_set.map" (39921 rows, 4 columns) that contains for each SNP, the autosome number, the SNP name, a column with data coded 0 and the SNP position on autosome.

Identifier
DOI	https://doi.org/10.15454/PWKBFB
Metadata Access	https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.15454/PWKBFB

Provenance
Creator	Flori, Laurence
Publisher	Recherche Data Gouv
Contributor	Flori, Laurence
Publication Year	2019
Funding Reference	INRA, Metaprogramme ACCAF GALIMED project
Rights	info:eu-repo/semantics/closedAccess
OpenAccess	false
Contact	Flori, Laurence (INRA - Institut National de la Recherche Agronomique)

Representation
Resource Type	Dataset
Format	application/gzip
Size	13502142
Version	1.0
Discipline	Agriculture, Forestry, Horticulture; Geosciences; Life Sciences; Animal Husbandry, Breeding and Hygiene; Ecology; Biology; Omics