Replication Data for: Non-Invasive Monitoring of Microvascular Oxygenation and Reactive Hyperemia using Hybrid, Near-Infrared Diffuse Optical Spectroscopy for Critical Care

DOI

In this work, a state-of-the-art bed-side monitor combining time-domain near infrared spectroscopy, diffuse correlation spectroscopy, a pulse oximeter, and an automatized tourniquet was utilized. An automatized vascular occlusion test was used to evaluate peripheral endothelial, microvascular, and metabolic function in a subject admitted to the intensive care (ICU). The data used in this study are read from binary files produced by the platform. These binary files follow a pre-determined format, allowing them to be easily read and processed using various platforms such as MATLAB, Python, and R. The data processing involves then importing the data from these files, followed by appropriate preprocessing steps to ensure appropriate data quality of the displayed data. Preprocessing involves several key steps to prepare the data for analysis. First, movement artifacts are removed. Next, data alignment is performed to synchronize time-series data. We utilize the real time data extracted from the binary data to extract relevant features: simple linear fitting and integration techniques are used to retrieve the deoxygenation and reoxygenation rates during the VOT, along with the area under the curves for tissue oxygenation and blood flow, respectively.

Matlab, 2021b

Identifier
DOI https://doi.org/10.34810/data1866
Related Identifier IsSupplementTo https://doi.org/10.3791/66062
Metadata Access https://dataverse.csuc.cat/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.34810/data1866
Provenance
Creator Yaqub, Muhammad Atif ORCID logo; ZANOLETTI, MARTA ORCID logo; Cortese, Lorenzo ORCID logo; Senciales Sánchez, Daniel ORCID logo; KARADENİZ, UMUT ORCID logo; Martínez García, Jacqueline ORCID logo; Durduran, Turgut ORCID logo
Publisher CORA.Repositori de Dades de Recerca
Contributor Durduran, Turgut; Fundació Institut de Ciències Fotòniques
Publication Year 2024
Funding Reference Fundació Cellex Barcelona ; Fundació Mir-Puig ; Agencia Estatal de Investigación PID2019-106481RB-C31/10.13039/501100011033 ; Agencia Estatal de Investigación CEX2019-000910-S ; Generalitat de Catalunya AGAUR-2017-SGR-1380 ; Generalitat de Catalunya RIS3CAT-001-P-001682 CECH ; FEDER EC ; Fundacion Joan Ribas Araquistain ; FCRI ; European Commission 101016087 ; European Commission 101017113 ; European Commission 871124 ; European Commission 101062306 ; Fundació La Marató de TV3, 2017 ; Fundació La Marató de TV3, 2020 ; LUX4MED ; MEDLUX
Rights CC BY-NC-ND 4.0; info:eu-repo/semantics/openAccess; http://creativecommons.org/licenses/by-nc-nd/4.0
OpenAccess true
Contact Durduran, Turgut (Institute of Photonic Sciences)
Representation
Resource Type Experimental data; Dataset
Format text/tab-separated-values; text/plain
Size 102289; 5736
Version 1.0
Discipline Life Sciences; Medicine; Natural Sciences; Physics
Spatial Coverage Castelldefels, Catalonia, Spain