Evaluating Nanopore-based bacterial variant calling

Benchmark various nanopore-based variant callers on 14 different species. Samples are sequenced on the latest (September 2023) R10.4.1 Nanopore flowcells and Illumina. Ground truth assemblies are generated for each sample.

Identifier
Source https://data.blue-cloud.org/search-details?step=~0129C43194751A129E88EFCB21A46823A72724FDD19
Metadata Access https://data.blue-cloud.org/api/collections/9C43194751A129E88EFCB21A46823A72724FDD19
Provenance
Instrument Illumina MiSeq; GridION; ILLUMINA; OXFORD_NANOPORE
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Contributor The University of Melbourne
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science