ArtSymbioCyc, a metabolic network database collection dedicated to insect symbioses

DOI

The ArtSymbioCyc database is a collection of genomic resources for insect hosts and their obligate symbiotic or commensal bacteria annotated with the CycADS information system. Dedicated to metabolism, ArtSymbioCyc uses the powerful tools of the BioCyc community to analyze, compare and model the metabolic networks of the symbiotic partners on a genome-wide scale (including pathways, reactions or metabolites). The ArtSymbioCyc database collection is a dedicated resource that provides tools to study and compare the adaptive metabolic capacities of symbiotic organisms and to identify specific targets that may destabilize symbiotic equilibria and be useful for pest control. Here we put the functional annotation data used to reconstruct the metabolic networks from the different databases, as well as the reactions and metabolic networks that were inferred.

Identifier
DOI https://doi.org/10.57745/IRQOEL
Related Identifier IsCitedBy https://doi.org/10.1128/msystems.00140-25
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.57745/IRQOEL
Provenance
Creator Bâa-Puyoulet, Patrice ORCID logo; Gerlin, Leo ORCID logo; Parisot, Nicolas ORCID logo; Peignier, Sergio ORCID logo; Renoz, Francois ORCID logo; Calevro, Federica ORCID logo; Charles, Hubert ORCID logo
Publisher Recherche Data Gouv
Contributor Bâa-Puyoulet, Patrice; Charles, Hubert; INRAE, INSA Lyon, BF2I, UMR203; ELIV, UC Louvain
Publication Year 2024
Funding Reference INRAE ; INSA Lyon ; FNRS
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Bâa-Puyoulet, Patrice (INRAE); Charles, Hubert (INSA Lyon)
Representation
Resource Type Dataset
Format application/x-gzip; application/octet-stream
Size 10366377; 16161767; 11467482; 1799606; 2978117; 10538899; 11938244; 664346; 2925259; 2135527; 23133453; 26209549; 1600707; 726115; 3158210; 1987590; 907120; 10035063; 14513809; 2080235; 9426561; 17309794; 1988768; 4857; 4829166; 16468756; 16942265; 22898608; 4067432; 1896220; 11474708; 11203524; 6062677; 2074797; 1689020; 8550016; 9587754; 1075905; 2497322; 9428988; 12550968; 800683; 11189643; 17167863
Version 2.2
Discipline Agriculture, Forestry, Horticulture; Computer Science; Life Sciences