PigLet case study for ASTERICS

DOI

This case study focuses on fetal development in late gestation in pig species (Lefort et al. 2020). The study addresses the question of delayed development in mammalian that may impact survival ability at birth. Two ages at late gestation were studied, 90 and 110 days (birth is expected at 114 days). Two genetic lines were included, LW for Large White, with higher risk of delayed development, and MS for Meishan, more robust. Studied piglets were of four genotypes: LWLW, MSMS, and the crossed piglets LWMS and MSLW. The data is composed of in four datasets corresponding to metabolomic analyses (NMR) performed on plasma, urine, and amniotic fluid samples of 444 piglets and to a metadata file providing information on piglets and on the design of the experiment. In addition, the data collection also contains the results of the analysis performed with ASTERICS https://asterics.miat.inrae.fr under the UID piglet_usecase.

ASTERICS, 2.6

The three NMR datasets contain quantification as obtained by ASICS https://doi.org/10.1093/bioinformatics/btz248 (see complete description of the processing in source repository).

Identifier
DOI https://doi.org/10.57745/TCKSTD
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.57745/TCKSTD
Provenance
Creator Vialaneix, Nathalie ORCID logo; Liaubet, Laurence ORCID logo
Publisher Recherche Data Gouv
Contributor Vialaneix, Nathalie; INRAE; Entrepôt-Catalogue Recherche Data Gouv
Publication Year 2023
Funding Reference Région Occitanie 20008788 ; ANR PORCINET grant ANR-09-GENM005 ; ANR ANR-16-CONV-0004
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Vialaneix, Nathalie (Université de Toulouse, INRAE, UR MIAT, 31326 Castanet-Tolosan, France)
Representation
Resource Type Dataset
Format text/html; text/tab-separated-values; text/comma-separated-values; text/plain
Size 6360178; 5563624; 5425479; 26338; 383087; 446037; 380008; 1406; 214; 2647
Version 1.2
Discipline Agriculture, Forestry, Horticulture; Mathematics; Life Sciences; Agricultural Sciences; Agriculture, Forestry, Horticulture, Aquaculture; Agriculture, Forestry, Horticulture, Aquaculture and Veterinary Medicine; Medicine