Modeling the sphingolipid rheostat under wild-type and hypomorph Hai1a

DOI

This dataset contains the proposed sphingolipid rheostat model with mass-action kinetics and a proposed negative feedback from ceramide to its synthesis from Sphinganine. The model is written in the Systems Biology Markup Language (SBML) and with the experimental data, experimental conditions, parameters, and observables part of the PEtab paramter estimation problem.

The PEtab problem was used to infer the parameters from the experimental data in a reproducible manner. It is uploaded with the scripts to execute the estimation and process the simulation results. Further, the estimated model parameters and model simulation results are uploaded in machine- and human-readable formats.

Identifier
DOI https://doi.org/10.18419/darus-3838
Metadata Access https://darus.uni-stuttgart.de/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.18419/darus-3838
Provenance
Creator Höpfl, Sebastian ORCID logo
Publisher DaRUS
Contributor Höpfl, Sebastian; Radde, Nicole
Publication Year 2024
Funding Reference DFG FOR 5151 - 436883643 ; DFG EXC 2075 - 390740016
Rights CC BY 4.0; info:eu-repo/semantics/openAccess; http://creativecommons.org/licenses/by/4.0
OpenAccess true
Contact Höpfl, Sebastian (University of Stuttgart); Radde, Nicole (University of Stuttgart)
Representation
Resource Type Dataset
Format application/x-ipynb+json; image/png; application/x-hdf5; application/json; text/tab-separated-values; text/xml; application/octet-stream; text/x-python
Size 904213; 31002; 2370304; 433; 28629; 3503; 35348; 35008; 17762; 458; 120; 3561; 482; 1057; 376; 5023
Version 1.0
Discipline Jurisprudence; Law; Life Sciences; Medicine; Social and Behavioural Sciences