Prediction and Comparative Analysis of CTCF Binding Sites based on a First Principle Approach [Research Data]

DOI

The file contains the CTCF-DNA binding sites for complete genome of Homo sapiens (human), Mus musculus (mouse), Sus scrofa (pig), Capra hircus (goat), Aedes aegypti (dengue and yellow fever mosquito) and Drosophila melanogaster (fruit fly) using electronic nucleotide alignment. The data analysis is described in NN Oiwa, K Li, CE Cordeiro and DW Heermann, 2022 [arXiv:2110.10508]. Detailed description of the Electronic Nucleotide Alignment method can be found in NN Oiwa, CE Cordeiro, DW Heerman (2016). We also add Caenorhabditis elegans (worm), Plasmodium falciparum (protozoan) and Arabidopsis thaliana (plant) as negative test, since there is not CTCF in these species.

Identifier
DOI https://doi.org/10.11588/data/RDISCE
Related Identifier https://doi.org/10.1088/1478-3975/ac5dca
Metadata Access https://heidata.uni-heidelberg.de/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.11588/data/RDISCE
Provenance
Creator Li, Kunhe; Oiwa, Nestor Norio; Cordeiro, Claudette E.; Heermann, Dieter W.
Publisher heiDATA
Contributor Li, Kunhe; Oiwa, Nestor Norio; Cordeiro, Claudette E.; Heermann, Dieter W.
Publication Year 2022
Funding Reference Conselho Nacional de Desenvolvimento Tecnologico e Cientifico (CNPq), Brazil 248589/2013 ; bwHPC, Baden-Wuerttemberg ; German Research Foundation (DFG) INST 35/1134-1 FUGG ; Chinese Scholarship Council ; Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) EXC 2181/1 - 390900948
Rights info:eu-repo/semantics/openAccess
OpenAccess true
Contact Li, Kunhe (Institute for Theoretical Physics, Heidelberg University, Germany); Oiwa, Nestor Norio (Universidade Federal Fluminense, Brazil); Cordeiro, Claudette E. (Universidade Federal Fluminense, Brazil); Heermann, Dieter W. (Institute for Theoretical Physics, Heidelberg University, Germany)
Representation
Resource Type Dataset
Format application/zip
Size 5435541
Version 1.1
Discipline Life Sciences; Medicine; Natural Sciences; Physics