116 datasets found

LoopSeq sequencing data derived from amplicons of the full-length 16S rRNA in bacteria, the 18S-ITS region in fungi, and random amplified segments of baterial genomes.

Ticks are important vectors of a variety of pathogens. Recently, the viral and prokaryotic microbiomes in ticks have been explored using next-generation sequencing to understand...

Benchmarking dsrAB amplicon generation and sequence processing and analysis

This study examines monthly dynamics of marine microbial community between Jan-2005 and July-2018 from two size fractions (0.2-1.2 um and 1.2-80 um) at the San Pedro Ocean...

Coral skeletons record the past environmental signals. Microbiome based on SSU rRNA genes were investigated in the coral skeleton, which obtained from Tuvalu and recorded annual...

Amplicon sequencing of the 16S rRNA gene is the predominant method to quantify microbial compositions and to discover novel lineages. However, traditional short amplicons often...

16S and 18S rRNA amplicon data for seawater, sea ice, and experimental samples collected during the 2019-2020 MOSAiC expedition in the central Arctic Ocean

Here we tested the use of environmental-DNA (eDNA) metabarcoding on multiple molecular markers (i.e., 18S V4, 18S V7, 18S V9 rRNA, COI and rbcL) on seawater and sediment samples...

Surfaces of marine macrophytes (seagrasses and macroalgae) are inhabited by diverse microbial communities. Most studies focusing on epiphytic communities of macrophytes did not...

Simulated microbial communities of Trichodesmium and heterotrophic bacteria from Gulf of Aqaba, Eilat, Israel

This project described a novel high throughput single bacteria sequencing method.

Organisms rely on a network of microbes that seed the host body and are maintained via a shared relationship which is often times a consortial symbiosis. Marine invertebrates,...

Our study concerns the reliability of techniques for obtaining accurate and quantitative full-length 16S rRNA amplicon sequencing data on bacterial community structure with...

This study primarily evaluates the monthly dynamics of the marine microbial community at the San Pedro Ocean Time-series station (SPOT near Los Angeles, CA, USA). Other marine...

Background: We introduce AVIT Abundance and Variability In Taxonomy, an unbiased method to enrich for assigned members of microbial communities. As opposed to using a priori...

This study evaluates the diversity and activity of marine archaea via 16S rRNA gene and transcript sequencing. This method is complementary to evaluation of the activity of...

DNA metabarcode data derived three bulk specimen and 19 bulk soil samples collected from 11 sites across Canada.

Bacterial community in lyophilized roots of wild-growing sea beet was assessed by means of 16S rRNA sequencing

Water and sediment samples collected from coastal marine ecosystems across Indonesia to assess the biodiversity and structure of protist communities in the Indo-Pacific.

Read cloud sequencing and assembly of the human gut microbiome One marine sediment metagenome and one synthetic metagenome were included as validation and proof-of-concept of a...