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16S V4 sequencing of surface mucus from Montastraea cavernosa corals
These samples are from a time series experiment comparing different intervention treatments effectiveness at treating stony coral tissue loss disease (SCTLD). SCTLD-affected... -
Antibiotic suppression of Pocillopora coral bacteria microbiomes
Corals are important model organisms for understanding invertebrate host-microbe interactions however, the lack of controlled experimental approaches for manipulating... -
Developing a protocol, DNA extraction and pipelines for taxonomical assingmen...
Six DNA extraction methods were tested in pure cultures of different nano and picoplankton species. The same extractions were checked in non-axenic mock communities formed... -
Molecular detection of vector-borne pathogens from naturally infected dogs
Naturally infected canine blood with different vector-borne pathogens were subjected to microbial DNA enrichment using multiple methods. DNA extraction followed by PCR using... -
Ultra-accurate Microbial Amplicon Sequencing Directly from Complex Samples wi...
LoopSeq sequencing data derived from amplicons of the full-length 16S rRNA in bacteria, the 18S-ITS region in fungi, and random amplified segments of baterial genomes. -
DsrAB Mock community Variation
Benchmarking dsrAB amplicon generation and sequence processing and analysis -
Monthly time-series analysis of the marine microbial community from two size ...
This study examines monthly dynamics of marine microbial community between Jan-2005 and July-2018 from two size fractions (0.2-1.2 um and 1.2-80 um) at the San Pedro Ocean... -
Microbiome in coral skeleton at Tuvalu
Coral skeletons record the past environmental signals. Microbiome based on SSU rRNA genes were investigated in the coral skeleton, which obtained from Tuvalu and recorded annual... -
16S metagenomic analysis of the biogeographic changes associated with Salmone...
The aim of this study was to characterize the microbiome of various gastrointestinal locations (small intestine, large intestine, and feces) in swine using 16S sequencing... -
Bacterial composition in precipitation collected in Japan over one and half y...
We investigate the communities of the precipitation-mediated bacteria based on culture-independent techniques using 30 precipitation samples that captured over one and half... -
PacBio sequencing of 16S-ITS-23S rRNA operon amplicons
Amplicon sequencing of the 16S rRNA gene is the predominant method to quantify microbial compositions and to discover novel lineages. However, traditional short amplicons often... -
16S and 18S rRNA amplicon data for the Multidisciplinary drifting Observatory...
16S and 18S rRNA amplicon data for seawater, sea ice, and experimental samples collected during the 2019-2020 MOSAiC expedition in the central Arctic Ocean -
Multi-marker eDNA metabarcoding for non-indigenous species identification.
Here we tested the use of environmental-DNA (eDNA) metabarcoding on multiple molecular markers (i.e., 18S V4, 18S V7, 18S V9 rRNA, COI and rbcL) on seawater and sediment samples... -
Investigation of duckweed microbial communities
Investigation of duckweed (Landotia punctata) microbial communities using 16S metagenomic sequencing.</p><p>L. punctata growing in natural and nutrient-deficient... -
Seasonal dynamics of epiphytic microbial communities on marine macrophyte sur...
Surfaces of marine macrophytes (seagrasses and macroalgae) are inhabited by diverse microbial communities. Most studies focusing on epiphytic communities of macrophytes did not... -
Semi-quantitative characterisation of mixed pollen samples with genome skims ...
The ability to identify the constituent plant species that make up a mixed-species sample of pollen has important applications in ecology, conservation, agriculture, and other... -
Microbiome single cell atlases generated with a commercial instrument
This project described a novel high throughput single bacteria sequencing method. -
River and stream bacterial communities in a large urban-to-rural watershed
This study evaluates bacterial communities from rivers and streams in the Milwaukee river watershed, a large mixed land use watershed. The goal was to determine how microbial... -
Strongylocentrotus purpuratus microbiome raw sequence reads 16S rDNA
Organisms rely on a network of microbes that seed the host body and are maintained via a shared relationship which is often times a consortial symbiosis. Marine invertebrates,... -
Evaluation of PCR conditions for characterizing bacterial community with full...
Our study concerns the reliability of techniques for obtaining accurate and quantitative full-length 16S rRNA amplicon sequencing data on bacterial community structure with...