Comparison of next-generation sequencing methods for catfish bacterial microbiota profiling

Compared 3 different 16S rRNA sequencing protocols (two nanopore sequencing protocols targeting full length 16S rRNA gene and Illumina MiSeq on V4 region) for bacterial community profiling in a mock community, hybrid catfish samples (digesta, gill swab, skin swab) and water samples (pond water and holding tank).

Identifier
Source https://data.blue-cloud.org/search-details?step=~0120D60A8D7C541C0513ED3D9AD8E5D21493A6B45B0
Metadata Access https://data.blue-cloud.org/api/collections/0D60A8D7C541C0513ED3D9AD8E5D21493A6B45B0
Provenance
Instrument Illumina MiSeq; GridION; ILLUMINA; OXFORD_NANOPORE
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Spatial Coverage (-90.920W, 33.420S, -90.920E, 33.420N)
Temporal Point 2021-10-12T00:00:00Z