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Universal Amplicon Sequences (mixed 16S/18S) from GEOTRACES Cruises GA03 and ...
Dedicated sampling campaigns such as JGOFS, CLIVAR, and GEOTRACES have quantified critical oceanic biogeochemical processes on a global scale. Integrating these measurements... -
Bacteria in aquaponics vs. recirculating aquaculture
Aquaponics is an innovative method for sustainable food production, where plants absorb nutrients from the effluents of fish farming. We tested if aquaponics with mint as the... -
16S microbiome analysis of amoebic gill disease in Atlantic salmon
16S microbiome analysis of gill tissue and mucus from amoebic gill disease affected Atlantic salmon from Australia -
Metagenomic survey of pre-harvest agricultural water using long read sequencing
Leafy greens are responsible for nearly half of the produce-related Shiga toxin-producing Escherichia coli (STEC) outbreaks in the United States, implicating agricultural water... -
Marine cyanolichens from different littoral zones are associated with distinc...
16S rRNA gene illumina sequencing was used to assess the culture-independent bacterial diversity in the strictly marine cyanolichen species Lichina pygmaea and Lichina confinis,... -
Nanopore Amplicon Sequencing: Drinking Water Case Studies
Current drinking water quality assurance rules in New Zealand refer to Escherichia coli and total coliforms as the primary methods for the microbiological monitoring of water... -
Bacterial community dynamics following antibiotic exposure in a trematode par...
Parasites harbour rich microbial communities that may play a role in host-parasite interactions, from influencing the parasites infectivity to modulating its virulence.... -
Phylogenetic diversity and compositional dynamics of potential diazotrophs in...
Biological nitrogen fixation is an essential metabolism for sustaining global ocean productivity. Investigations over the past century have particularly established the... -
Characterizing chemoautotrophy and heterotrophy in marine archaea and bacteri...
Characterizing and quantifying metabolism in situ remains both a central goal and challenge for environmental microbiology. Here,we used a single-cell, multi-isotope approach to... -
Microbiome profiling of cestode infection of Atlantic salmon
The concept of a holobiont, a host organism and its associated microbial communities, encapsulates the vital role the microbiome plays in the normal functioning of its host.... -
Direct high-throughput sequencing of mercury methylation genes in environment...
The gene pair hgcAB is essential for microbial mercury methylation. Therefore, improved techniques for capturing hgcAB presence and diversity are necessary for identifying both... -
Eastern Oyster Microbiome Sequencing
The taxonomic and functional composition of the eastern oyster microbiome was profiled by amplicon sequencing targeting the V4 region of the 16S rRNA gene and shotgun... -
The impact of primary colonizers on the community composition of river biofilm
The goals of this study were to determine the assembly sequence of phylotypes from a river into a bacterial biofilm as well as determining how the biofilm of putative fish... -
Compositional stability of sediment microbial communities during a seagrass m...
The presence of seagrass shapes surface sediments and forms a specific environment for diverse and abundant sediment microbial communities. Although severe declines of seagrass... -
Environmental change affecting COastal ecosystems of tropical China during th...
Vibrio, a bacterial genus widespread in aquatic systems that contains several pathogenic species, is known for its potential accumulation in aquacultures. Thus, release of... -
DNA metabarcoding of fungi
DNA metabarcoding utilizing nanopore long-read amplicon sequencing for rapid identification of fungal taxa with a high level of phylogenetic resolution -
16S rRNA mock communities amplified with 515Y/926R and sequenced by HiSeq and...
This study compares the differences of 16S mock communities sequenced by HiSeq and MiSeq. Also, this study points out a weird HiSeq run we got. -
Transcriptome and metagenome sequencing of Magallana gigas exposed to low pH ...
Metagenome and transcriptome sequencing to study the effects of ocean acidification on Pacific oyster (M. gigas) development. Also examined the effect of sodium molybdate on... -
Human vaginal microbiome in healthy women in Sweden
The vaginal microbiome plays a major role in female and reproductive health. To understand the dynamics of the vaginal microbiome and the changes that occur leading to disease... -
Comprehensive single-PCR 16S and 18S rRNA community analysis validated with m...
This study aims to test 1) the performance of 515Y/926R and V4 primers using 18S mock communities, 2) the length-based biases through PCR and sequencing using mixed 16S and 18S...