116 datasets found

Dedicated sampling campaigns such as JGOFS, CLIVAR, and GEOTRACES have quantified critical oceanic biogeochemical processes on a global scale. Integrating these measurements...

Benthic diatoms are the dominant primary producers in intertidal mudflats and constitute a major source of organic carbon to consumers and decomposers residing within these...

16S rRNA gene illumina sequencing was used to assess the culture-independent bacterial diversity in the strictly marine cyanolichen species Lichina pygmaea and Lichina confinis,...

Parasites harbour rich microbial communities that may play a role in host-parasite interactions, from influencing the parasites infectivity to modulating its virulence....

Ammonia monooxygenase subunit A (amoA) gene have been widely used for investigating phylogenetic diversity and spatial distribution of ammonia-oxidizing archaeal (AOA) and...

2bRAD-M was applied to profile the renal pelvis urobiome and aimed to determine if the urobiome in the renal pelvis is different between kidneys with and without stone(s)

Biological nitrogen fixation is an essential metabolism for sustaining global ocean productivity. Investigations over the past century have particularly established the...

Characterizing and quantifying metabolism in situ remains both a central goal and challenge for environmental microbiology. Here,we used a single-cell, multi-isotope approach to...

To study the diet of Purple Sandpipers during the long overwintering period using metabarcoding.

Metamobilomics (sequencing cirucular DNA < approx 100kb) is usually performed using DNA exonucleases to remove linear DNA followed by a rolling circle (typically phi29)...

The taxonomic and functional composition of the eastern oyster microbiome was profiled by amplicon sequencing targeting the V4 region of the 16S rRNA gene and shotgun...

The presence of seagrass shapes surface sediments and forms a specific environment for diverse and abundant sediment microbial communities. Although severe declines of seagrass...

Vibrio, a bacterial genus widespread in aquatic systems that contains several pathogenic species, is known for its potential accumulation in aquacultures. Thus, release of...

This study compares the differences of 16S mock communities sequenced by HiSeq and MiSeq. Also, this study points out a weird HiSeq run we got.

Metagenome and transcriptome sequencing to study the effects of ocean acidification on Pacific oyster (M. gigas) development. Also examined the effect of sodium molybdate on...

This study aims to test 1) the performance of 515Y/926R and V4 primers using 18S mock communities, 2) the length-based biases through PCR and sequencing using mixed 16S and 18S...

Samples were used to examine the performance of V4 SSU rRNA gene primers.

Our DNA extraction protocol is years old, and we want to compare new extraction methods to address outstanding issues. For more details, check out the motivation and...

Amplicon sequencing of metabolic marker genes provides targeted snapshots of community metabolic potential. However, inferring microbial taxonomy from metabolic marker gene...

Investigating the microbiomes associated to glacier-fed streams around the world