TREEPEACE: Development of target sequence capture and estimation of genomic relatedness in a mixed oak stand

DOI

Le jeu de données est constitué de 191,281 SNPs identifiés dans 297 arbres (mélange de Q. robur et Q. petraea) situés dans la forêt de La Petite Charnie. Ces SNPs ont été détectés sur le génome de référence du chêne 3P, obtenu dans le cadre du projet ANR Genoak et hébergé par l'Urgi (https://urgi.versailles.inra.fr/Projects/Forest-trees-projects/GenOak). Les SNPs sont également accessibles sur le JBrowse de l'URGI: https://urgi.versailles.inra.fr/WebApollo_oak_PM1N/jbrowse/?loc=Qrob_H2.3_Sc0000024%3A63548..63683&tracks=DNA%2CAnnotations%2CSNP&highlight= Ces données ont été obtenues dans le cadre de l'ERC TreePeace (#FP7-339728) dirigée par Antoine Kremer.

This dataset contains 191,281 SNPs identified in 297 oak trees (mixed oak stand of Q. robur and Q. petraea) located in La Petite Charnie forest. These SNPs have been identified in the oak reference genome 3P. The genome has been obtained within the Genoak ANR project and is available at URGI (https://urgi.versailles.inra.fr/Projects/Forest-trees-projects/GenOak). SNPs can also be accessed directly throught the URGI JBrowse: https://urgi.versailles.inra.fr/WebApollo_oak_PM1N/jbrowse/?loc=Qrob_H2.3_Sc0000024%3A63548..63683&tracks=DNA%2CAnnotations%2CSNP&highlight= These data have been obtained within the TreePeace ERC project (#FP7-339728), directed by Antoine Kremer.

Ces données complètent l'article suivant: Lesur I., Alexandre, H., Boury C. et al. 2018. Genomic relatedness, as assessed by targeted sequence capture, in a mixed oak stand. Frontiers in Plant Science. Under review.

Identifier
DOI https://doi.org/10.15454/OMO2JC
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.15454/OMO2JC
Provenance
Creator Lesur Kupin, Isabelle
Publisher Recherche Data Gouv
Contributor Lesur Kupin, Isabelle
Publication Year 2018
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Lesur Kupin, Isabelle (INRA - Institut National de la Recherche Agronomique)
Representation
Resource Type Dataset
Format application/vnd.oasis.opendocument.spreadsheet
Size 6666153
Version 1.2
Discipline Agriculture, Forestry, Horticulture; Agricultural Sciences; Agriculture, Forestry, Horticulture, Aquaculture; Agriculture, Forestry, Horticulture, Aquaculture and Veterinary Medicine; Life Sciences; Silviculture; Plant Science