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uncultured bacterium Targeted Locus (Loci)
The bacterial community at 2,000-m depth was studied over one-year survey in 2011 at the ANTARES site (Northwestern Mediterranean Sea). The most active member were analysed in... -
coral mucus microbiome Raw sequence reads
The grazing activity by specific marine organisms represents a growing threat to the survival of many scleractinian species. For example, the recent proliferation of the... -
Azteca chartifex (formicidae) influence on leaf microbiota of Byrsonima seric...
Arboreal ant species have high population densities and low genetic variability among workers, which should favour a high probability of disease spreading in a colony. However,... -
Two weeks in the World 2020
The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units... -
Copepod induced bacterial community Raw sequence reads
Live copepods from the North Atlantic subtropical gyre were collected and rinsed to be used in bioassay-type experiments. Bacteria present in various seawater and copepod... -
uncultured bacterium Raw sequence reads
A metatranscriptomic library was made of copepods picked from the Bermuda Atlantic Time Series station as well as copepods used in bottle incubation experiments. Expression data... -
Dissemination_of_ESBL_enzymes_among_Vibrio_cholerae_isolates_from_Kenya
We have a collection of 19 V. cholerae isolated in the years 2009/2010 from Dadaab refugee camp patients. The V. cholerae are resistant to third generation cephalosporins.... -
Short-term exposure to high-water temperature causes a shift in the microbiom...
Marine sponges harbor diverse microbiomes that contribute to their energetic and metabolic needs. Although numerous studies on sponge microbial diversity exist, relatively few... -
Taxonomic and functional heterogeneity of the gill microbiome in Phacoides pe...
Taxonomic and functional heterogeneity of the gill microbiome in Phacoides pectinatus -
uncultured bacteria pyrosequencing (nifH and 16S rRNA) of coral A.millepora e...
Diazotrophs harbored in Acropora millepora early life stages -
Bacterial associates of two Caribbean coral species reveal species-specific d...
Samples were collected in order to document the bacterial ribotype (16S rRNA gene) diversity associated with the SML of healthy Montastraea faveolata and Porites astreoides... -
Genomic_and_bacterial_blueprint_of_the_human_gastrointestinal_microbiota
Here we present a comprehensive collection of 737 whole-genome sequenced bacterial isolates from humans to understand the blueprint of human gastrointestinal microbiota. This... -
Assessing the potential of natural microbial communities to improve a second ...
Comparison of multiple sources of inocula from thermal and saline environments and fermentation derived communities to improve a second generation biofuels platform using the... -
Freshwater Targeted Locus (Loci)
Bacteria are immensely diverse and drive many ecosystem processes. Bacterial biogeography as well as the coupling between bacterial community composition and functioning is... -
Critical Assessment of Metagenome Interpretation marine raw sequencing data
Evaluating metagenomic software is key for optimizing metagenome interpretation and focus of the initiative for the Critical Assessment of Metagenome Interpretation (CAMI). The... -
Deciphering interactions between the marine benthic diatom Seminavis robusta ...
Complex interactions between microalgae and bacteria, such as mutualism, parasitism and competition, shape the structure and functioning of photosynthetic microbial mats. Using... -
Gove Harbour Sediment Targeted Locus (Loci)
One of the aims of the project was to collect bacterial and archaeal community data and correlate these with environmental conditions in coastal marine sediment, including... -
Rhizosphere soil Targeted Locus
The prime objective of this approach is to study the impacts of genetically modified crops in the rhizosphere environment, to explore uncultured bacteria. A bacterium is most... -
Gorgonian octocoral pyrosequencing Targeted Locus
The purpose of this study was to determine the culture-independent bacterial community associated with different species of gorgonian octocorals (Eunicea fusca, Eunicea sp., and... -
Characterization of Metabolically Active Bacterial Populations in Subseafloor...
Sequences represent cDNA reverse transcribed from 16S rRNA gene transcripts of the V1-V3 region. Total RNA was extracted from marine sediments collected from the Nankai Trough...