46 datasets found

Paracentrotus lividus Developmental Transcriptome

Sequencing data for tube feet transcriptome and tube feet specific differential RNA-seq

The transcriptome of embryos which overexpress Pmar1 is compared to the transcriptomes of embryos which do not express Pmar1. For this purpose, sea urchin embryo RNAs were...

RNA-seq approach was conducted on gonadal tissues of Mediterranean sea urchin (Paracentrotus lividus). Here, we generated the first de novo assembly transcriptome and annotation...

The dataset consists of abundance records of 43 marine species in the Mediterranean Sea from 2001 to 2020. Selected species include some protected and non-indigenous species,...

In sea urchin, fertilization triggers an increase in protein synthesis activity and recruitment of stored maternal mRNAs into polysomes. This translational activation is...

The formation of embryonic calcitic spicules in the sea urchin is an excellent model system to study biomineralization. The gene regulatory network (GRN) that underlies this...

The benthic zone is the lowest level of a marine or freshwater system including the bottom, such as the ocean floor or the bottom of a lake, the sediment surface and some...

The application of a seascape genetics approach to explore connectivity patterns of the long-distance dispersal sea urchin Paracentrotus lividus (Lamarck, 1816) in the Central...

Sea urchins lack proper eye organs but are photosensitive. In this study, we investigate an extraocular photoreceptor cell (PRC) system in developmental stages of the sea urchin...

Sample from various times during Paracentrotus lividus embryogenesis were collected to create a transcriptome and for subsequent differential expression analysis of gene...

Marine sediment can accumulate persistent hydrophobic organic contaminants, such as polychlorinated biphenyls, polycyclic aromatic hydrocarbons,...

We sequenced and assembled the genome of the mediterranean sea urchin Paracentrotus lividus using a combination of illumina paired-end, mate-pairs, long-read pacbio, and...

Sea urchins are emblematic marine animals with a rich fossil record and represent instrumental models for developmental biology. As echinoderms, sea urchins display several...

Diatoms are microscopic, unicellular algae that represent dominant photosynthetic organisms in the world’s oceans sustaining marine food web. In contrast to the chemical ecology...

Engineered nanoparticles (ENPs) are increasingly used to generate innovative industrial and medical goods. Because of their broad applications, they form a new class of...

P.lividus GBS data from Carreras et al. 2020 East is East and West is West: Hierarchical analyses reveal differential adaptation footprints in the edible sea urchin...

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent...

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent...

The effect of pH ranging from 8.0 to 6.8 (total scale - pHT) on fertilization, cleavage and larval development until pluteus stage was assessed in an intertidal temperate sea...