21 datasets found

Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing...

We compare quantitative polymerase chain reaction with colony forming units derived from three different plating medias. PDA, PDA with chloramphenicol and DRBC with...

Various bacterial isolates from rhizosphere. Some strains isolated from hop cones. Genome assemblies will be used for comparative genomics across different bacterial lineages.

CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria

Use selective bacterial culture to understand the identity, prevalence, persistence, and transmission of MDROs contaminating hospital intensive care unit sinks and water sources...

Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set...

The different 122 bacteria isolated from soil aggregates under three fertilizer treatments

Whole genome sequencing of pure cultured microbial isolates of multiple species as part of the Food and Drug Administration surveillance effort of pathogens in medical products.

Integrated metabolome and microbiome reveal soil microbial dynamics, metabolic functions and and their correlation in a millennium paddy soil chronosequence

Genome Sequencing and Assembly of Pantoa and Pseudomonas sp. isolated from hop cones collected in Bradford, NH.

Draft and complete genome sequences of foodborne bacterial pathogens collected for research purposes at the FDA's Center for Food Safety and Applied Nutrition.

<b>FDA-ARGOS project update</b> <p>FDA-ARGOS database updates may help researchers rapidly validate diagnostic tests and use qualified genetic sequences to...

Nucleotide sequences including G+C contents and oligonucleotide compositions tend to be more similar between plasmid and hosts' chromosome than between the plasmid and non-host...

A total of 227 genomes were sequenced using Illumina HiSeq 4000, as will serve as a baseline for benchmarking various metagenomics tools. In addition, 61 other genomes used for...

In an attempt to identify problematic endophytes growing on or in media during the in-vitro culture stages of Citrus meristem cryopreservation and recovery, low coverage genomic...

Single isolates from an undergraduate microbiology laboratory class at Marquette University (BIOL4802). In this class, students think of a question about a particular...

Cover crops, a soil conservation practice, are amongst tools that can contribute to reducing disease pressure caused by Pseudomonas syringae, considered as one of the most...

Cell-free expression systems enable rapid prototyping of genetic programs in vitro. However, current throughput of cell-free measurements is often limited by the use of...

Genomes of bacterial endophytes of poison ivy: identification of luxI and luxR