37 datasets found

Sequencing of several clinical isolates of different species

Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing...

Whole genome sequencing data from non-Clostridioides difficile isolates recovered as part of the CDC-funded Granular Modeling project.

Single colony and metagenomic samples for the ReNEW publication Raw sequence reads

Multi-drug resistant gram negative bacteria (also known as “Superbugs”) are causing infections in vulnerable patients in hospitals around the world. Much of the clinically...

Enterobacteriaceae strains isolated from newborns in a Chinese hospital

Hospital wastewater is an increasingly recognized reservoir for resistant Gram-negative organisms. Factors involved in establishment and persistence of Klebsiella pneumoniae...

The purpose of this project is related to metagenomic survey and genomic epidemiology analysis of antimicrobial resistance bacteria (in particular, carbapenem and/or beta-lactam...

The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units...

Isolation of pathogens directly from primary liquid blood culture infection diagnosis using WGS

Infections with antimicrobial resistant organisms are an important cause of morbidity and mortality worldwide and an ever-growing public health concern. The ability of tracking...

CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria

Use selective bacterial culture to understand the identity, prevalence, persistence, and transmission of MDROs contaminating hospital intensive care unit sinks and water sources...

A collection of Gammaproteobacteria isolated from environmental and patient sources originating from a single hospital in the United States

Whole genome sequencing of bacterial isolates over a 1-year period from a hospital's intensive care units.

Cell-free expression systems enable rapid prototyping of genetic programs in vitro. However, current throughput of cell-free measurements is often limited by the use of...

Prospective collection and sequencing of positive blood culture isolates in hospitalized adults in Cambodia

Here we present a comprehensive collection of 737 whole-genome sequenced bacterial isolates from humans to understand the blueprint of human gastrointestinal microbiota. This...

The emergence and spread of antimicrobial resistance (AMR) poses a significant challenge to the safe delivery of modern medical care. Multidrug-resistant organisms (MDRO) are...