16 datasets found

Sequencing of several clinical isolates of different species

Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing...

The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units...

CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria

Use selective bacterial culture to understand the identity, prevalence, persistence, and transmission of MDROs contaminating hospital intensive care unit sinks and water sources...

Acinetobacter ursingii M3 is one of the first discovered plant growth-inhibiting bacteria (PGIB) of duckweed Lemna minor. The goal of this study is to reveal the molecular...

Whole genome sequencing of bacterial isolates over a 1-year period from a hospital's intensive care units.

Non-alcoholic fatty liver disease (NAFLD) is one of the most common causes of chronic liver disease in children worldwide. Gut microbiota and their metabolites may influence...

Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set...

Amplification of V4-V5 hypervariable regions was performed as conventional PCR procedure. The primers 515F (5'- GTG CCA GCM GCC GCG GTA A -3') and 907R (5'- CCG TCA ATT CCT TTG...

There is evidence that nonalcoholic fatty liver disease (NAFLD) is affected by gut microbiota, glucose,and lipid.However,the function of water-electrolyte metabolism remains...

<b>FDA-ARGOS project update</b> <p>FDA-ARGOS database updates may help researchers rapidly validate diagnostic tests and use qualified genetic sequences to...

A survey across centres in Africa into the main bacterial causes of bloodstream infections. These data are part of a pre-publication release. For information on the proper use...

The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support...

Prospective collection and sequencing of positive blood culture isolates in hospitalized adults in Cambodia

Whole genome sequencing of bacterial pathogens is combined with machine learning and data mining of the electronic medical record to enhance outbreak detection in hospitals and...