17 datasets found

Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing...

Whole genome sequencing data from non-Clostridioides difficile isolates recovered as part of the CDC-funded Granular Modeling project.

We investigated the presence and prevalence of ESBL- and Carbapenemase-carrying bacterial species by swabbing "high touch" areas as deduced from literature (taps, door handles,...

The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units...

Microbial communities in the suspended sludge and electrodes biofilms were investigated in the microbial electrolysis cell.

Single isolates from an undergraduate microbiology laboratory class at Marquette University (BIOL4802). In this class, students think of a question about a particular...

CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria

Use selective bacterial culture to understand the identity, prevalence, persistence, and transmission of MDROs contaminating hospital intensive care unit sinks and water sources...

Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set...

The different 122 bacteria isolated from soil aggregates under three fertilizer treatments

The Genome sequencing and assembly of Acinetobacter spp.

Use selective bacterial culture to understand the identity, prevalence, persistence, and transmission of bacteria contaminating hospital intensive care unit surfaces in two...

Sequence data from the hybrid assembly of four genomes from antibiotic resistant bacteria isolated by undergraduates in a microbiology course

Amplification of V4-V5 hypervariable regions was performed as conventional PCR procedure. The primers 515F (5'- GTG CCA GCM GCC GCG GTA A -3') and 907R (5'- CCG TCA ATT CCT TTG...

Whole genome sequencing of bacterial pathogens is combined with machine learning and data mining of the electronic medical record to enhance outbreak detection in hospitals and...

<b>FDA-ARGOS project update</b> <p>FDA-ARGOS database updates may help researchers rapidly validate diagnostic tests and use qualified genetic sequences to...