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Rps10: a new barcode for high throughput amplicon sequencing of Oomycete comm...
Oomycetes are a group of eukaryotes related to brown algae and diatoms, many of which cause disease in plants and animals. Improved methods are needed for rapid and accurate... -
Taxonomic diversity of Blood Falls and proglacial West lobe Lake Bonney
Determine the microbiome of the end member brine from the subglacial aquifer at the source of Blood Falls by comparing with surface samples. Additionally compare with samples... -
Comparison of sequencing bias for library preparation kit
In this study, sequencing biases in bacterial genome sequencing introduced by currently available library preparation kits for Illumina sequencer were compared. Furthermore, we... -
Crassostrea gigas microbiota and pathobiota
This study explore the Pacific oyster (C. gigas) microbiota and pathobiota during mortality episodes in Europe by applying 16S rRNA gene-based microbial profiling and a new... -
Daily ocean time-series 2011 at San Pedro Ocean time-series
Phytoplankton (16S, 18S), Bacterial, Archaeal dynamics at SPOT at daily resolution -
Whole-genome sequencing of bacteria, fungi, plants, and metagenomes
Species and metagenomic samples used for the FELIX (Finding Engineering-Linked Indicators) project. -
LoopSeq paper
LoopSeq assembled 16S amplicons using Illumina PE reads -
Chesapeake Bay 2019 Particle Size Fractionation
These are samples taken along the Chesapeake Bay mainstem in the summer of 2019. Samples were collected at the surface and bottom and in one case a third oxycline depth at each... -
eDNA from Gulf of Mexico Ecosystems and Carbon Cruise 2021 (GOMECC-4)
Seawater was collected on board the NOAA ship Ronald H. Brown as part of the fourth Gulf of Mexico Ecosystems and Carbon Cycle (GOMECC-4) cruise from September 13 to October 21,... -
Fish microbiota 101: host traits, ecology, and environmental factors influenc...
Fish are the most diverse and widely distributed vertebrates, yet little is known about the microbial ecology of fishes nor the biological and environmental factors that... -
Investigation of duckweed microbial communities
Investigation of duckweed microbial communities in natural and stress condition using V3V4 16S rRNA sequencing -
Evaluating the effects of translocation and host characteristics on skin asso...
The factors shaping the composition and dynamics of microbiomes associated to aquatic organisms, especially regarding skin microbiomes have been understudied despite the... -
Challenges of comparing marine microbiome community composition
Challenges of comparing marine microbiome community composition -
These g23 major capsid protein gene sequences of T4-like-myoviruses are from ...
from a manuscript in prep: "Viruses are thought to influence microbial community structure by density-dependent, host-specific infection, which can be strain-specific.... -
Benthic protist community in Mediterranean sediment samples Raw sequence reads
This study had the aims of (i) identifying the single-celled protist assemblages in the superficial sediments of Italian Mediterranean regional seas, (ii) relating their... -
QMRA of beach water by Nanopore sequencing-based viability-metagenomics absol...
Overall, this study aims to achieve absolute quantification for live microbial cells in beach water. To achieve this, propidium monoazide (PMA) dye was used at the sample... -
Characterization of the bacterial communities associated with multiple specie...
Culture-dependent and -independent characterization of bacteria associated with 11 strains of Symbiodiniaceae belonging to six genera -
Candidate diazotrophs in deep-sea sediments are phylogenetically and cataboli...
Marine diazotrophs play a key role in determining ecosystem productivity by alleviating nitrogen limitation. However, we know little about the identity and activity of... -
Tijuana River pollution at Imperial Beach 2019
Rain events increase Tijuana river flow to levels that the international water treatment plant in the Mexico-US border can not process. Therefore, rain runoff and sewage... -
Environmental DNA metabarcoding differentiates between micro-habitats within ...
While the utility of environmental DNA (eDNA) metabarcoding surveys for biodiversity monitoring continues to be demonstrated, the spatial and temporal variability of eDNA, and...