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Statistical analysis scripts to analyze metabarcoding data of fungal communit...
This archive provides the statistical analysis scripts used to analyze a metabarcoding dataset (available at https://www.ncbi.nlm.nih.gov/bioproject/678415) representing foliar... -
Mapping of known effector genes on five Meloidogyne genomes
Based on the literature, we established a manually curated list of M. incognita genes specifically expressed in sub-ventral or dorsal secretory gland cells. We started from the... -
Ancestral reconstruction of the origin of M. incognita effectors in the Meloi...
Based on the mapping of non-redundant known M. incognita subventral (SvG) and dorsal (DG) gland effectors on the genomes of five Meloidogyne species ancestral numbers were... -
Supplementary tables to manuscript: “Comparison of double-stranded RNA (dsRNA...
Supplementary tables to manuscript in Chapter 2 -
Root water status in three contrasted herbaceous species grown in rhizotrons
This dataset contains NMR and ecophysiological data that support the findings of a manuscript “Circadian variation of root water status in three herbaceous species assessed by... -
Bioinformatic scripts to assess the effect of the cropping system on both com...
These bioinformatics scripts were applied to the sequences available at https://doi.org/10.15454/3DPFNJ. They are based on several softwares, including SparCC (Friedman and Alm... -
Gene annotation of the Illumina draft of the Plasmopara viticola genome
This dataset includes the gene annotation for the Illumina draft of the Plasmopara viticola genome. This genome draft has been published in Dussert et al. 2016... -
Experimental validations of TE-impacted coding or regulatory loci
Contains experimental validations results. The sup_mat_2.pptx file summarize: i) Characteristics of the tested loci: position in the genome, inserted TE, the region... -
Enriched gene ontology terms in upregulated genes at the transition from eggs...
Analysis of differentially represented (over and under) Gene Ontology (GO) terms in the genes showing significant up-regulation at the transition between the eggs and the... -
Phenotypic trait dataset of Pinus pinea from five common gardens of the INRAE...
Données sur les traits phénotypiques de Pinus pinea mesurés dans les jardins communs du réseau INRAE de génétique forestière pour la recherche et l'expérimentation (GEN4X). Ce... -
Microsatellite genotyping of French populations of the carrot cyst nematode H...
The dataset include two files containing the genotypic data (Genepop format) for the different Heterodera carotae populations sampled at the plant scale (H_carotae_plants.txt)... -
Orthofinder rooted species tree
Rooted phylogenomics species tree performed by Orthofinder on the 63 species, in Newick format. An annotated version of the tree in PDF format, produced with iTOL is also... -
TREEPEACE project website
TREEPEACE project website There are widespread concerns that trees, due to their long life-span, are not able to cope with the rapid ongoing climate change. While many studies... -
Transposable Elements prediction and annotation in the C. elegans genome
This datasets contains all the essential files produced during the TE prediction, annotation, and post-processing in the C. elegans genome (e.g. TE consensus library, TE... -
MERCI effector-enriched motifs in the 100 first amino acids of M. incognita p...
MERCI effector-enriched motifs in the 100 first amino acids of M. incognita proteins M. incognita proteins with at least one of the 4 motifs identified as enriched in the known... -
Biotic Stress and Grain-Legumes WoS DataSet 1980-2018
The text file corresponds to the search query capturing the main biotic stress research theme on grain-legumes (both soya and pulses, see Species Grain-Legumes WoS dataset) to... -
Negative set used to identify enriched motif in effectors regulatory regions
As negative set, we selected 167 M. incognita genes from an Orthofinder analysis (Emms & Kelly, 2019) previously performed on 64 genomes, including 62 nematodes and two... -
Bioinformatic scripts to analyze metabarcoding data of fungal communities ass...
This archive provides the bioinformatic scripts used to analyze a metabarcoding dataset (available at https://www.ncbi.nlm.nih.gov/bioproject/678415) representing foliar fungal... -
Data from extensive comparative measurements of conventional, conservation an...
Observational and experimental data of crop pests, crop pest natural enemies, soil sensitivity to erosion, crop productivity, pathogenic fungal infection and root colonization... -
Optimising reactive disease management using spatially explicit models at the...
R code associated with the book chapter "Optimising reactive disease management using spatially explicit models at the landscape scale". The R code describes a simple...