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Vibrio parahaemolyticus Genome sequencing and assembly
We isolated and sequenced five V. parahaemolyticus strains with different virulence level to identify the key virulent determinants that remarkably affected the pathogenicty. -
Antibacterial resistance in Lebanon
Sequences of Gram-negative pathogens of clinical samples in Lebanon and the MENA region -
CDC HAI-Seq Gram-negative bacteria
CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria -
Evaluating Nanopore-based bacterial variant calling
Benchmark various nanopore-based variant callers on 14 different species. Samples are sequenced on the latest (September 2023) R10.4.1 Nanopore flowcells and Illumina. Ground... -
Pakistan and United States ICU sink/water transmission dynamics
Use selective bacterial culture to understand the identity, prevalence, persistence, and transmission of MDROs contaminating hospital intensive care unit sinks and water sources... -
Gammaproteobacteria Raw sequence reads
A collection of Gammaproteobacteria isolated from environmental and patient sources originating from a single hospital in the United States -
Characterization of antimicrobial and antibiotic resistance in wastewater pri...
Metagenomic and genome sequences from samples collected from the primary effluent of wastewater around Baltimore, MD. -
Microbial community structure in the central Arctic Ocean
Bacterial and Archaeal community structure in the central Arctic Ocean -
Klebsiella pneumoniae Genome sequencing and assembly
Carbapenem-producing Klebsiella pneumoniae whole-genome sequencing -
Bacterial isolates from intensive care units
Whole genome sequencing of bacterial isolates over a 1-year period from a hospital's intensive care units. -
Gut microbiota in children with non-alcoholic fatty liver disease
Non-alcoholic fatty liver disease (NAFLD) is one of the most common causes of chronic liver disease in children worldwide. Gut microbiota and their metabolites may influence... -
BactID
Bacterial identification run in house at UCLA -
Efficient generation of complete sequences of MDR-encoding plasmids by rapid ...
We demonstrate a rapid and efficient approach to obtain multiple MDR plasmid sequences through the use of the MinION nanopore sequencing platform, which is incorporated in a... -
RNA Atlas of Bacterial Human Pathogens Uncovers Stress Dynamics Linked to Bac...
Pathogenic bacteria encounter a variety of stressful host environments during infection. Their responses to meet these challenges protect them from deadly damages and aid in... -
Enterobacterales, Acinetobacter spp, Burkholderia spp, Pseudomonas spp, Steno...
Prospective collection and sequencing of positive blood culture isolates in hospitalized adults in Cambodia -
bacterial multiDAP
Escherichia coli and Pseudomonas simiae transcription factor binding sites mapped in 48 bacterial genomes -
Genomic_and_bacterial_blueprint_of_the_human_gastrointestinal_microbiota
Here we present a comprehensive collection of 737 whole-genome sequenced bacterial isolates from humans to understand the blueprint of human gastrointestinal microbiota. This... -
diagnosis of infectious peripheral pulmonary lesions by mNGS
We used mNGS to detect pathogens in matched transbronchial lung biopsy (TBLB), bronchoalveolar lavage fluid (BALF), and bronchial needle brushing (BB) specimens from 39 patients... -
Pathogens adhered to plastic litter collected in Zanzibar
Plastic litter was collected from Zanzibar, adhered bacteria were isolated, analyzed and whole genome sequenced