239 datasets found

BACKGROUND: Cholera is endemic in Bangladesh, with outbreaks reported annually. Currently, the majority of epidemic cholera reported globally is El Tor biotype Vibrio cholerae...

The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units...

To analyze and collect data of bacterial genome sequences related to foodborne diseases.

We evolved populations of E. coli under strict genetic drift effects by transferring a single colony daily to a fresh plate. The E. coli is the strain K12 substrain MG1655 with...

The food and water safety pilot project is a comprehensive strategy that integrates multidisciplinary components from diverse federal science sources to address two main goals....

Recently, five distinct clades of Escherichia have been recovered from the aquatic environments, and they are believed to be environmentally adapted. We collected more than 4000...

NDM-35-producing ST167 Escherichia coli highly resistant to beta-lactams including cefiderocol

WGS sequencing of various bacterial isolates which were collected from mouse stool and clinical human colon samples.

Sequences of Gram-negative pathogens of clinical samples in Lebanon and the MENA region

Whole genome sequencing of cultured E. coli as part of the US Food and Drug Administration's WGS surveillance effort for the rapid traceback of foodborne pathogens.

CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria

EURL reference testing

Use selective bacterial culture to understand the identity, prevalence, persistence, and transmission of MDROs contaminating hospital intensive care unit sinks and water sources...

OXA-48-like-producing Klebsiella pneumoniae in Southern Spain</p><p>in 2014-2015.

ESKAPEE pathogens isolated from foods. ESKAPEE is an acronym for Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas...

This study was designed to understand genetic diversity of Escherichia coli, especially we are interested in O-glycan synthesis gene repertories.

Whole genome sequencing of bacterial isolates over a 1-year period from a hospital's intensive care units.

This project involved sequencing some bacterial isolates from ATCC (https://www.atcc.org) to test ONT-only analysis methods.

Non-alcoholic fatty liver disease (NAFLD) is one of the most common causes of chronic liver disease in children worldwide. Gut microbiota and their metabolites may influence...

Exemplary sequences of human outbreak strains from the Danish surveillance of foodborne bacterial pathogens e.g. Salmonella, STEC, Listeria