-
Genome-wide nucleosome position data for 12 yeast species
We mapped nucleosome positions genome-wide in 12 Ascomycetes Overall design: Illumina sequencing of mononucleosomal DNA isolated from mid-log cultures grown in rich medium... -
RNA vesicles content of fungi: Candida albicans strain ATCC Cryptococcus neof...
RNA vesicles content of fungi. -
Whole genome sequencing of 13 isolates of Candida albicans and 15 of Candida ...
We retrospectively studied consecutive patients admitted to the Neonatal care unit with candidaemia caused by C. albicans or C. parapsilosis. -
Diagnosing corneal infections in formalin fixed specimens using next generati...
DNA extracted from 16 cases of infectious keratitis, as well as 4 control corneas with no known infection, was sequenced to detect pathogenic and non-pathogenic organisms. All... -
The evolution, evolvability, and engineering of gene regulatory DNA [RNA-seq]
Here, we used RNA-seq to quantify expression conservation across many Ascomycete yeasts. Overall design: We used strand-specific RNA-seq (dUTP) to quantify mRNA expression in... -
Ultra-accurate Microbial Amplicon Sequencing Directly from Complex Samples wi...
LoopSeq sequencing data derived from amplicons of the full-length 16S rRNA in bacteria, the 18S-ITS region in fungi, and random amplified segments of baterial genomes. -
Comparative transcriptomic analysis of the response of CUG-clade Candida spec...
Pathogenic Candida fungi are a leading cause of opportunistic, hospital-associated bloodstream infections with high mortality rates, typically in immunocompromised patients.... -
Clinical evaluation of mNGS in unbiased pathogens diagnosis of UTIs
Advance the implementation of mNGS in pathogen diagnosis in clinics. -
Bacteria and yeast pathogens sequenced from human blood culture specimens
Bloodstream infection is a major cause of morbidity and mortality worldwide. Early pathogen detection and administration of appropriate antimicrobial therapy substantially... -
Sodium arsenite Project
Study the micorbiomes of woody tissues of grapevines that were treated or not by sodium arsenite -
A phylogenetic framework to study the evolution of transcriptional regulatory...
Comparative expression analysis of HOG1 KOs during osmotic stress in the ascomycete yeasts Overall design: Gene expression was measured in KO strains as well as WT strains of... -
Small RNAs in budding yeast
RNAi, a gene-silencing pathway triggered by double-stranded RNA, is conserved in diverse eukaryotic species but has been lost in the model budding yeast, Saccharomyces... -
RNA-Seq of healthy human dendritic cells after challenge with four different ...
Dendritic cells from three healthy human donors were cultured in the presence or absence of either Aspergillus fumigatus, Saccharomyces cerevisiae, Candida albicans or Candida... -
Metagenomic next-generation sequence data of Suspected Infected Pancreatic Ne...
42 blood samples and 22 peri-pancreatic specimens from 42 suspected infected pancreatic necrosis patients were collected to investigate the diagnostic performance of metagenomic... -
Candida albicans Hsf1 ChIP-seq
Whole-Genome Functional Genomics Characterisation of Hsf1 and Hsp90 in Candida albicans. -
FDA-ARGOS is a database with public quality-controlled reference genomes for ...
<b>FDA-ARGOS project update</b> <p>FDA-ARGOS database updates may help researchers rapidly validate diagnostic tests and use qualified genetic sequences to... -
Endotracheal aspirate Raw sequence reads
Rapid detection of pathogens and antimicrobial resistance genes in ventilator-associated pneumonia in ICU by metagenomic nanopores sequencing