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Clinical isolate sequencing
Sequencing of several clinical isolates of different species -
Recovery of nearly 8,000 uncultivated bacterial and archaeal genomes substant...
Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing... -
Bacterial WGS validation panel
The set represents a typical workflow in the public health microbiological laboratory: 10 Enterobacteriaceae isolates, 5 gram-positive cocci, 5 gram-negative non-fermenting... -
Single colony and metagenomic samples for the ReNEW publication Raw sequence ...
Single colony and metagenomic samples for the ReNEW publication Raw sequence reads -
Metagenomes containing bacteria from positive blood culture broths in patient...
Metagenomes containing bacteria from positive blood culture broths in patients with sepsis -
Gammaproteobacteria Genome sequencing
Complete genome and methylome analysis of original NEB strains producers of restriction endonuclease -
Isolates recovered from wastewater in Ontario Canada Raw sequence reads
Isolates recovered from wastewater in Ontario Canada Raw sequence reads -
Whole genome sequencing of biocontrol bacteria
The goal of the project is to uncover genome sequences of bacteria that show biocontrol activity of plant pathogens. Bacteria were isolated from several plant species including... -
Metagenomic survey and whole genome sequencing of antimicrobial resistant bac...
The purpose of this project is related to metagenomic survey and genomic epidemiology analysis of antimicrobial resistance bacteria (in particular, carbapenem and/or beta-lactam... -
Two weeks in the World 2020
The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units... -
MBL-resistant P. aeruginosa
MBL-resistant P.aeruginosa from an Austrian Hospital outbreak -
CDC HAI-Seq Gram-negative bacteria
CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria -
Winter rye cover crops shelter competent squash phyllosphere bacteria to redu...
Cover crops, a soil conservation practice, are amongst tools that can contribute to reducing disease pressure caused by Pseudomonas syringae, considered as one of the most... -
Pakistan and United States ICU sink/water transmission dynamics
Use selective bacterial culture to understand the identity, prevalence, persistence, and transmission of MDROs contaminating hospital intensive care unit sinks and water sources... -
Bacterial isolates from intensive care units
Whole genome sequencing of bacterial isolates over a 1-year period from a hospital's intensive care units. -
Enterobacterales, Acinetobacter spp, Burkholderia spp, Pseudomonas spp, Steno...
Prospective collection and sequencing of positive blood culture isolates in hospitalized adults in Cambodia -
diagnosis of infectious peripheral pulmonary lesions by mNGS
We used mNGS to detect pathogens in matched transbronchial lung biopsy (TBLB), bronchoalveolar lavage fluid (BALF), and bronchial needle brushing (BB) specimens from 39 patients... -
Collection of 3,087 bacterial metagenome-assembled genomes recovered from met...
Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set... -
ICUUKseq_GNB
The emergence and spread of antimicrobial resistance (AMR) poses a significant challenge to the safe delivery of modern medical care. Multidrug-resistant organisms (MDRO) are...