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Metagenomic next-generation sequencing for microbial pathogen
This study aims to detect pathogens in bronchoalveolar lavage fluid (BALF) from SCAP patients using both metagenomics extended-spectrum pathogenic microorganism sequencing... -
ARGA: Antibiotic Resistance Gene Analysis in CHUAC
Whole genome sequencing of bacteria in clinical samples, mainly from the A Coruna University Hospital Complex (CHUAC, Galicia, Spain) and associated collections, under project... -
Shigella Genome sequencing and assembly
Shigella species Genome sequencing and assembly -
The Genomics of Speciation in Campylobacter
For further information on this study please see http://www.sanger.ac.uk/resources/downloads/bacteria/campylobacter-jejuni.html This data is part of a pre-publication release.... -
Two weeks in the World 2020
The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units... -
Rectal carriage of mcr in pregnant women and neonates in three Nigerian state...
Rectal carriage of mcr in pregnant women and neonates in three Nigerian state hospitals between 2015 and 2017. -
CDC HAI-Seq Gram-negative bacteria
CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria -
Antimicrobial Surveillance from Brigham & Women's Hospital, Boston MA
The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support... -
Single laboratory evaluation of the (Q20+) nanopore sequencing kit for bacter...
This study aimed to evaluate the potential of Oxford Nanopore Technologies (ONT) GridION with R10.4.1 flow cells and associated library chemistry as a rapid and accurate method... -
The isolates from feces in Felidae
The isolates from feces in Felidae -
Bacterial isolates from intensive care units
Whole genome sequencing of bacterial isolates over a 1-year period from a hospital's intensive care units. -
Exemplary sequences of human outbreak strains from the Danish surveillance of...
Exemplary sequences of human outbreak strains from the Danish surveillance of foodborne bacterial pathogens e.g. Salmonella, STEC, Listeria -
The emergence of extensively drug-resistant Shigella sonnei in Vietnam
Ciprofloxacin-resistant Shigella sonnei has emerged as an important global health issue since the last decade. In this study we provide unprecedented insights into the local... -
Enterobacterales, Acinetobacter spp, Burkholderia spp, Pseudomonas spp, Steno...
Prospective collection and sequencing of positive blood culture isolates in hospitalized adults in Cambodia -
HPACC_Murray_project
http://www.sanger.ac.uk/resources/downloads/bacteria/ This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the... -
Major food bacterial pathogens in the united states and around the world, inc...
University of California at Davis 100K Pathogen Genome Project. Major bacterial pathogens in the United States and around the world, including Salmonella enterica, E. coli,... -
GenomeTrakr WGS Validation Strain Set
This BioProject hosts genome sequence data for the FDA GenomeTrakr's validation strain set, which includes 32 bacterial species of foodborne pathogens and common contaminants.... -
Escherichia, Shigella, Salmonella, Listeria, Campylobacter, Vibrio Raw sequen...
Sequences associated with validation of sequencing reagents and platforms