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Clinical isolate sequencing
Sequencing of several clinical isolates of different species -
Recovery of nearly 8,000 uncultivated bacterial and archaeal genomes substant...
Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing... -
GCID Multi-drug resistant Gram-negative clinical isolates from Thailand
This is the umbrella project for a new project to sequence up to 200 Gram-negative MDR clinical isolates from Thailand. -
CDC Granular Modeling Pathogen WGS Data
Whole genome sequencing data from non-Clostridioides difficile isolates recovered as part of the CDC-funded Granular Modeling project. -
Metagenomes containing bacteria from positive blood culture broths in patient...
Metagenomes containing bacteria from positive blood culture broths in patients with sepsis -
Carbapenems of animal food
Sequencing analysis of carbapenems strains from animal food sources -
Genome sequencing of KPC-producing Gammaproteobacteria
Multi-drug resistant gram negative bacteria (also known as “Superbugs”) are causing infections in vulnerable patients in hospitals around the world. Much of the clinically... -
Environmental Surveillance of ESBL and Carbapenemase-Producing Gram-Negative ...
We investigated the presence and prevalence of ESBL- and Carbapenemase-carrying bacterial species by swabbing "high touch" areas as deduced from literature (taps, door handles,... -
Enterobacteriaceae strains isolated from newborns in a Chinese hospital
Enterobacteriaceae strains isolated from newborns in a Chinese hospital -
Risk factors associated with Carbapenemase-producing Enterobacterales (CPE) p...
Hospital wastewater is an increasingly recognized reservoir for resistant Gram-negative organisms. Factors involved in establishment and persistence of Klebsiella pneumoniae... -
Isolates recovered from wastewater in Ontario Canada Raw sequence reads
Isolates recovered from wastewater in Ontario Canada Raw sequence reads -
Carbapenem and pan-aminoglycoside resistance bacteria in wastewater canalizat...
Wastewater has a predominant role for Public Health as source, reservoir and vehicle of antimicrobial resistance genes. This role is especially critical in developing countries... -
Diversity_of_MRSA
http://www.sanger.ac.uk/resources/downloads/bacteria/staphylococcus-aureus.html This data is part of a pre-publication release. For information on the proper use of... -
Metagenomic survey and whole genome sequencing of antimicrobial resistant bac...
The purpose of this project is related to metagenomic survey and genomic epidemiology analysis of antimicrobial resistance bacteria (in particular, carbapenem and/or beta-lactam... -
Two weeks in the World 2020
The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units... -
Bacterial WGS: Wyoming Public Health Laboratory, Wyoming, USA
Whole-genome sequencing of bacterial isolates as part of WPHL's surveillance effort -
Staph aureus and gram negative isolates from blood culture Raw sequence reads
Isolation of pathogens directly from primary liquid blood culture infection diagnosis using WGS -
Rectal carriage of mcr in pregnant women and neonates in three Nigerian state...
Rectal carriage of mcr in pregnant women and neonates in three Nigerian state hospitals between 2015 and 2017. -
Isolated Wastewater Bacteria
Infections with antimicrobial resistant organisms are an important cause of morbidity and mortality worldwide and an ever-growing public health concern. The ability of tracking...