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Clinical isolate sequencing
Sequencing of several clinical isolates of different species -
Recovery of nearly 8,000 uncultivated bacterial and archaeal genomes substant...
Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing... -
CDC Granular Modeling Pathogen WGS Data
Whole genome sequencing data from non-Clostridioides difficile isolates recovered as part of the CDC-funded Granular Modeling project. -
Single colony and metagenomic samples for the ReNEW publication Raw sequence ...
Single colony and metagenomic samples for the ReNEW publication Raw sequence reads -
ARGA: Antibiotic Resistance Gene Analysis in CHUAC
Whole genome sequencing of bacteria in clinical samples, mainly from the A Coruna University Hospital Complex (CHUAC, Galicia, Spain) and associated collections, under project... -
Genome sequencing of KPC-producing Gammaproteobacteria
Multi-drug resistant gram negative bacteria (also known as “Superbugs”) are causing infections in vulnerable patients in hospitals around the world. Much of the clinically... -
Enterobacteriaceae strains isolated from newborns in a Chinese hospital
Enterobacteriaceae strains isolated from newborns in a Chinese hospital -
Risk factors associated with Carbapenemase-producing Enterobacterales (CPE) p...
Hospital wastewater is an increasingly recognized reservoir for resistant Gram-negative organisms. Factors involved in establishment and persistence of Klebsiella pneumoniae... -
Metagenomic survey and whole genome sequencing of antimicrobial resistant bac...
The purpose of this project is related to metagenomic survey and genomic epidemiology analysis of antimicrobial resistance bacteria (in particular, carbapenem and/or beta-lactam... -
Two weeks in the World 2020
The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units... -
Isolated Wastewater Bacteria
Infections with antimicrobial resistant organisms are an important cause of morbidity and mortality worldwide and an ever-growing public health concern. The ability of tracking... -
CDC HAI-Seq Gram-negative bacteria
CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria -
Pakistan and United States ICU sink/water transmission dynamics
Use selective bacterial culture to understand the identity, prevalence, persistence, and transmission of MDROs contaminating hospital intensive care unit sinks and water sources... -
Gammaproteobacteria Raw sequence reads
A collection of Gammaproteobacteria isolated from environmental and patient sources originating from a single hospital in the United States -
Antimicrobial Surveillance from Brigham & Women's Hospital, Boston MA
The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support... -
Bacterial isolates from intensive care units
Whole genome sequencing of bacterial isolates over a 1-year period from a hospital's intensive care units. -
Multiplex transcriptional characterizations across diverse and hybrid bacteri...
Cell-free expression systems enable rapid prototyping of genetic programs in vitro. However, current throughput of cell-free measurements is often limited by the use of... -
Enterobacterales, Acinetobacter spp, Burkholderia spp, Pseudomonas spp, Steno...
Prospective collection and sequencing of positive blood culture isolates in hospitalized adults in Cambodia -
Genomic_and_bacterial_blueprint_of_the_human_gastrointestinal_microbiota
Here we present a comprehensive collection of 737 whole-genome sequenced bacterial isolates from humans to understand the blueprint of human gastrointestinal microbiota. This...