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Various representative species from the mustard family (Brassicaceae). Raw se...
We reconstructed a phylogeny of ~95% of the genera within the angiosperm family Brassicaceae using >1,000 target genes following two publications (Johnson et al, 2019,... -
Selaginella moellenforfii, Arabidopsis thaliana, Equisetum arvense, Zea mays ...
Laser microdissected samples of shoot apical meristem sub-domains from Selaginella moellendorfii, Equisetum arvense, and Zea mays samples. -
Conservation and divergence of methylation patterning in plants and animals
Cytosine DNA methylation is a heritable epigenetic mark present in many eukaryotic organisms. While DNA methylation likely has a conserved role in gene silencing, the levels and... -
Critical assessment of DNA adenine methylation in eukaryotes using quantitati...
The discovery of N6-methyldeoxyadenine (6mA) across eukaryotes led to a search for additional epigenetic mechanisms. However, some studies have highlighted confounding factors... -
1500 genome skims from the Norwegian arctic vascular flora
That project includes the genome skims for 1529 specimens of vascular plants of the Norwegian arctic flora. They belongs 479 genera, and 105 families. -
Raw reads of direct RNA sequencing of Toxoplasma gondii and Arabidopsis thali...
Correct 3prime end processing of mRNAs is regarded as one of the regulatory cornerstones of gene expression. In a parasite that must answer to the high regulatory requirements... -
The prevalence, evolution and chromatin signatures of plant regulatory elements
Chromatin accessibility and modification is a hallmark of regulatory DNA, which has led to the discovery of cis-regulatory elements (CREs). Here, we characterize chromatin... -
Genetic determinants of endophytism in the Arabidopsis root mycobiome
Roots of Arabidopsis thaliana do not engage in symbiotic association with mycorrhizal fungi but host taxonomically diverse fungal communities that influence health and disease... -
Whole-genome sequencing of bacteria, fungi, plants, and metagenomes
Species and metagenomic samples used for the FELIX (Finding Engineering-Linked Indicators) project. -
Poly(A)-tail profiling reveals an embryonic switch in translational control
Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths have impeded greater... -
Whole genome mapping of DNA G-quadruplexes in multiple species by G4-seq
The identification of DNA G-quadruplexes (G4s) in the genome is important to study different biological processes in which these structures play a role, such as genome... -
The enigmatic tropical alpine flora on the African sky islands is young, dist...
Genome skimming data from 92 flowering plant species of the tropical African high mountains used to infer the age of colonisation of the afroalpine -
performance test of DeLTa-Seq
This data set were used for development and performance evaluation of Direct-lysate targeted RNA-Seq (DeLTa-Seq) -
Vibrio vulnificus Transcriptome or Gene expression
Gene expression of Vibrio vulnificus environmental isolates in artificial seawater and human serum -
In vivo single-molecule RNA structure analysis reveals COOLAIR RNA structural...
We used the SHAPE reagent, 2 methylnicotinic acid to do the in vivo RNA secondary structure chemical probing. NAI was prepared as reported previously. Briefly, Arabidopsis... -
Small RNA sequencing of the 8 to 30-nucleotide window from various samples
RNA-sequencing (RNA-Seq) protocols and bioinformatic pipelines are designed to streamline downstream analyses on sequences believed to be the most important. Here, we have... -
Detection of internal N7-methylguanosine (m7G) RNA modifications by mutationa...
Methylation of guanosine on position N7 (m7G) on internal RNA positions have been found in all domains of life and have been implicated in human disease, but m7G modifications... -
Error correction tool benchmark
This project compares the performance of different hybrid error correction tools. -
CrY2H-seq Arabidopsis Thaliana transcription factor screen raw sequence reads
Raw reads generated by CrY2H-seq interactome screening of Arabidopsis Thaliana transcription factor ORFs -
Virus-mediated export of chromosomal DNA in plants
The propensity of viruses to acquire genetic material from relatives and possibly from infected hosts makes them excellent candidates as vectors for horizontal gene transfer....