Dataset: Combining molecular dynamics simulations and scoring method to computationally model ubiquitylated linker histones in chromatosomes

DOI

The dataset comprises atomistic molecular dynamics simulations of ubiquitylated linker histone H1. The provided data has been stripped from solvent and subsampled with a 50 ps timestep. The six ubiquitylation sites K30, K41, K47, K51, K56, and K63 can be found in their respective folders. The starting structures were created by rotating the chi3 angle of the ubiquitylated lysine. The simulation data encompasses the simulations from these starting structures plus so-called expansion simulations started from these initial simulations. Find more info in the provided README.

Identifier
DOI https://doi.org/10.48606/99
Metadata Access https://www.radar-service.eu/oai/OAIHandler?verb=GetRecord&metadataPrefix=datacite&identifier=10.48606/99
Provenance
Creator Sawade, Kevin ORCID logo; Marx, Andreas ORCID logo; Peter, Christine ORCID logo; Kukharenko, Oleksandra ORCID logo
Publisher Universität Konstanz
Contributor RADAR
Publication Year 2023
Funding Reference The authors acknowledge support by the state of Baden-Württemberg through bwHPC State of Baden-Wuerttemberg Other ; bwForCluster MLS&WISO: DFG grant INST 35/1134-1 FUGG German Research Foundation Other ; German Research Foundation through CRC 969 German Research Foundation Other ; Carl-Zeiss-Stiftung Carl Zeiss AG und SCHOTT AG Other
Rights Open Access; GNU Lesser General Public License v3.0 only; info:eu-repo/semantics/openAccess; https://www.gnu.org/licenses/lgpl-3.0-standalone.html
OpenAccess true
Representation
Resource Type Dataset
Format application/x-tar
Discipline Chemistry; Natural Sciences
Temporal Coverage 2020-2023