PacBio sequencing of Northern krill transcriptome.

In this project we studied the seasonal variations in Northern krill (Meganyctiphanes</p><p>norvegica) sensitivity to oil concentrations relevant for discharges of produced water (byproduct of crude oil extraction). Northern krill are key organisms in temperate and Arctic ecosystems, and constitute an important link in marine food webs. Abiotic factors (e.g. temperature and light) and biotic factors (e.g. lipid storage and reproductive status) vary with season and can potentially affect how krill respond to pollutants. These variations may affect accumulation of oil components and hence krill plasticity of response and sensitivity to oil. Genomic approaches will allow us to better understand the physiological responses of Northern krill exposed to oil and how this may vary according to season. Since there has been very little sequence data published for Northern krill, we generated a transcriptome of this species exposed to produced water during spring, autumn and winter using long read PacBio sequencing.

Identifier
Source https://data.blue-cloud.org/search-details?step=~012ACF98205E697F3106E5630B25C47F58DB9D4A893
Metadata Access https://data.blue-cloud.org/api/collections/ACF98205E697F3106E5630B25C47F58DB9D4A893
Provenance
Instrument PacBio RS II; PACBIO_SMRT
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Temporal Point 2014-01-01T00:00:00Z