Sulfidogenic bacteria enriched from deep anoxic Black Sea sediment and the description of Desulfopila canfieldii sp. nov.

Sulfidogenesis encompasses microbial reduction of sulfate and other sulfur compounds. It is the main mineralization process in organic-rich surface sediments in the deep anoxic basin of the Black Sea. Here, sulfate reduction is thought to be mediated by deltaproteobacterial sulfate-reducing bacteria (SRB) and other, currently unidentified sulfidogens. We present a cultivation-based study to investigate the diversity and identity of sulfidogens in sediment samples from the Black Sea at 2,100 m depth. We set up enrichments with combinations of the electron donors H2, formate, acetate, propionate, butyrate, or lactate, and the electron acceptors sulfate, thiosulfate or S0, and analyzed the enriched communities with 16S rRNA gene amplicon sequencing. This resulted in enriched putative sulfidogens (Desulfobacteraceae, Desulfobulbaceae) as well as fermentative bacteria. In sulfate-reducing, acetate-degrading enrichments, Aegiribacteria/Fermentibacteria ssp. were enriched. In sulfur-reducing, acetate-degrading dilution enrichments, Desulfuromonadales Sva1033 bacteria became abundant. Sulfur-disproportionating enrichments contained canonical Desulfocapsa spp., but also other putatively disproportionating Desulfobulbaceae members. We isolated and characterized a novel SRB of the Desulfopila genus, strain LS5BT, with lactate as original substrate. Strain LS5BT was an incomplete oxidizer producing acetate from lactate during sulfate reduction, despite encoding the presumably bidirectional acetyl-CoA pathway, similar to its facultatively lithoautotrophic close relative Desulfopila inferna JS_SRB250LacT. Strain LS5BT had the capacity for dissimilatory manganese reduction, which is an unusual trait among SRB and of which the mechanism is unknown. We propose strain LS5BT represents the novel species Desulfopila canfieldii.

Identifier
Source https://data.blue-cloud.org/search-details?step=~012F8AF18BC50D9C5B0F107A4E02F899E43F9BFEF6E
Metadata Access https://data.blue-cloud.org/api/collections/F8AF18BC50D9C5B0F107A4E02F899E43F9BFEF6E
Provenance
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Spatial Coverage (30.310W, 42.530S, 30.310E, 42.530N)
Temporal Coverage Begin 2016-02-01T00:00:00Z
Temporal Coverage End 2020-04-20T00:00:00Z