The prokaryotic microbiome of the red calcified macroalgae Corallina officinalis has been sequenced using the V6 region of 16S rRNA. Raw sequence reads

The living prokaryotic microbiome of the calcified geniculate (articulated) red alga, Corallina officinalis from the intertidal seashore is characterised for the first time based</p><p>on the V6 hypervariable region of 16S rRNA. Results revealed an extraordinary diversity of bacteria associated with the microbiome. Thirty-five prokaryotic phyla were</p><p>recovered, of which Proteobacteria, Cyanobacteria, Bacteroidetes, Actinobacteria, Planctomycetes, Acidobacteria, Verrucomicrobia, Firmicutes and Chloroflexi made up the</p><p>core microbiome. Unclassified sequences made up twenty-five percent of sequences suggesting insufficient sampling of the world’s oceans/macroalgae. The greatest diversity</p><p>in the microbiome was on the upper shore, followed by the lower shore then the middle shore, although the microbiome community composition did not vary between shore</p><p>levels. The C. officinalis core microbiome was broadly similar in composition to those reported in the literature for crustose coralline algae (CCAs) and free-living rhodoliths.</p><p>Differences in relative abundance of the phyla between the different types of calcified macroalgal species may relate to the intertidal versus subtidal habit of the taxa and</p><p>functionality of the microbiome components. The results indicate that much work is needed to identify prokaryotic taxa, and to determine the nature of the relationship of</p><p>the bacteria with the calcified host spatially, temporally and functionally.

Identifier
Source https://data.blue-cloud.org/search-details?step=~0120259295464AC5AB087463AF56C93410C7F15D23E
Metadata Access https://data.blue-cloud.org/api/collections/0259295464AC5AB087463AF56C93410C7F15D23E
Provenance
Instrument Illumina HiSeq 2500; ILLUMINA
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Contributor The Natural History Museum, London
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Temporal Point 2012-11-14T00:00:00Z