Microorganisms and dissolved metabolites distinguish Floridas Coral Reef habitats
As coral reef ecosystems experience unprecedented change, effective monitoring of reef traits supports management, conservation, and intervention efforts. There has been promising use in omics techniques to quantify key components of reef ecosystems that may serve as invisible sensors for reef health, dissolved metabolites and microorganisms. Dissolved metabolites are the chemical currencies released by reef organisms and transferred among microorganisms, contributing to nutrient cycling and signaling on reefs. Here we applied four omics techniques (taxonomic microbiome via amplicon sequencing, functional microbiome via shotgun metagenomics, targeted metabolomics and untargeted metabolomics) to waters overlying Floridas Coral Reef as well as microbiome profiling on corals from these reefs, to understand how microbes and dissolved metabolites reflect biogeographical, benthic and nutrient properties of this 500 km barrier reef. We show that the microbial and metabolite omics approaches each differentiated reef habitats, and that geographic zone had the most significant influence on microbial and metabolic characteristics. Further, seawater microbiome profiling and targeted metabolomics were significantly related to more reef and environmental characteristics compared to metagenomic sequencing and untargeted metabolomics. Within five coral species, microbiomes were also significantly related to reef zone, followed by species and disease status, suggesting that the water-based patterns in Florida also impact the reef builders. A combination of differential abundance and indicator species analysis revealed metabolite and microbial signatures of specific reef zones which demonstrate the utility of these techniques to provide new insights into reef microbial and metabolite traits which reflect broader ecosystem processes.
- ELIXIR ENA
- IF F100 Tissue
- IF F101 Tissue
- IF F102 Tissue
- IF F103 Tissue
- IF F104 Tissue
- IF F105 Tissue
- IF F106 Tissue
- IF F107 Tissue
- IF F108 Tissue
- IF F109 Tissue
- IF F110 Tissue
- IF F111 Tissue
- IF F112 Tissue
- IF F113 Tissue
- IF F114 Tissue
- IF F115 Tissue
- IF F116 Tissue
- IF F117 Tissue
- IF F118 Tissue
- IF F119 Tissue
- IF F120 Tissue
- IF F121 Tissue
- IF F122 Tissue
- IF F123 Tissue
- IF F124 Tissue
- IF F125 Tissue
- IF F126 Tissue
- IF F127 Tissue
- IF F137 Tissue
- IF F138 Tissue
- IF F139 Tissue
- IF F140 Tissue
- IF F141 Tissue
- IF F142 Tissue
- IF F143 Tissue
- IF F144 Tissue
- IF F145 Tissue
- IF F146 Tissue
- IF F147 Tissue
- IF F148 Tissue
- IF F149 Tissue
- IF F150 Tissue
- IF F151 Tissue
- IF F152 Tissue
- IF F153 Tissue
- IF F154 Tissue
- IF F155 Tissue
- IF F156 Tissue
- IF F157 Tissue
- IF F158 Tissue
- IF F159 Tissue
- IF F160 Tissue
- IF F161 Tissue
- IF F162 Tissue
- IF F163 Tissue
- IF F164 Tissue
- IF F165 Tissue
- IF F166 Tissue
- IF F167 Tissue
- IF F168 Tissue
- IF F169 Tissue
- IF F170 Tissue
- IF F171 Tissue
- IF F172 Tissue
- IF F173 Tissue
- IF F174 Tissue
- IF F175 Tissue
- IF F176 Tissue
- IF F177 Tissue
- IF F178 Tissue
- IF F179 Tissue
- IF F180 Tissue
- IF F181 Tissue
- IF F182 Tissue
- IF F183 Tissue
- IF F184 Tissue
- IF F185 Tissue
- IF F186 Tissue
- IF F187 Tissue
- IF F188 Tissue
- IF F189 Tissue
- IF F190 Tissue
- IF F191 Tissue
- IF F192 Tissue
- IF F193 Tissue
- IF F194 Tissue
- IF F195 Tissue
- IF F196 Tissue
- IF F197 Tissue
- IF F198 Tissue
- IF F199 Tissue
- IF F200 Tissue
- IF F201 Tissue
- IF F202 Tissue
- IF F203 Tissue
- IF F204 Tissue
- IF F205 Tissue
- IF F206 Tissue
- IF F207 Tissue
- IF F208 Tissue
- IF F209 Tissue
- IF F210 Tissue
- IF F211 Tissue
- IF F212 Tissue
- IF F213 Tissue
- IF F214 Tissue
- IF F215 Tissue
- IF F216 Tissue
- IF F217 Tissue
- IF F218 Tissue
- IF F219 Tissue
- IF F220 Tissue
- IF F221 Tissue
- IF F222 Tissue
- IF F223 Tissue
- IF F224 Tissue
- IF F225 Tissue
- IF F226 Tissue
- IF F227 Tissue
- IF F228 Tissue
- IF F229 Tissue
- IF F230 Tissue
- IF F231 Tissue
- IF F232 Tissue
- IF F233 Tissue
- IF F234 Tissue
- IF F235 Tissue
- IF F236 Tissue
- IF F237 Tissue
- IF F238 Tissue
- IF F239 Tissue
- IF F240 Tissue
- IF F241 Tissue
- IF F242 Tissue
- IF F243 Tissue
- IF F244 Tissue
- IF F245 Tissue
- IF F262 Tissue
- IF F263 Tissue
- IF F264 Tissue
- IF F265 Tissue
- IF F266 Tissue
- IF F267 Tissue
- IF F268 Tissue
- IF F269 Tissue
- IF F270 Tissue
- IF F271 Tissue
- IF F272 Tissue
- IF F273 Tissue
- IF F274 Tissue
- IF F275 Tissue
- IF F276 Tissue
- IF F277 Tissue
- IF F278 Tissue
- IF F279 Tissue
- IF F280 Tissue
- IF F281 Tissue
- IF F282 Tissue
- IF F283 Tissue
- IF F284 Tissue
- IF F285 Tissue
- IF F286 Tissue
- IF F287 Tissue
- IF F288 Tissue
- IF F289 Tissue
- IF F290 Tissue
- IF F291 Tissue
- IF F292 Tissue
- IF F62 Tissue
- IF F63 Tissue
- IF F64 Tissue
- IF F65 Tissue
- IF F66 Tissue
- IF F67 Tissue
- IF F68 Tissue
- IF F69 Tissue
- IF F70 Tissue
- IF F71 Tissue
- IF F72 Tissue
- IF F73 Tissue
- IF F74 Tissue
- IF F75 Tissue
- IF F76 Tissue
- IF F77 Tissue
- IF F78 Tissue
- IF F79 Tissue
- IF F80 Tissue
- IF F81 Tissue
- IF F82 Tissue
- IF F83 Tissue
- IF F84 Tissue
- IF F85 Tissue
- IF F86 Tissue
- IF F87 Tissue
- IF F88 Tissue
- IF F89 Tissue
- IF F90 Tissue
- IF F91 Tissue
- IF F92 Tissue
- IF F93 Tissue
- IF F94 Tissue
- IF F95 Tissue
- IF F96 Tissue
- IF F97 Tissue
- IF F98 Tissue
- IF F99 Tissue
- IF H100 Tissue
- IF H101 Tissue
- IF H102 Tissue
- IF H103 Tissue
- IF H104 Tissue
- IF H105 Tissue
- IF H106 Tissue
- IF H107 Tissue
- IF H108 Tissue
- IF H109 Tissue
- IF H110 Tissue
- IF H111 Tissue
- IF H112 Tissue
- IF H113 Tissue
- IF H114 Tissue
- IF H115 Tissue
- IF H116 Tissue
- IF H117 Tissue
- IF H118 Tissue
- IF H119 Tissue
- IF H120 Tissue
- IF H121 Tissue
- IF H122 Tissue
- IF H123 Tissue
- IF H124 Tissue
- IF H125 Tissue
- IF H126 Tissue
- IF H127 Tissue
- IF H137 Tissue
- IF H138 Tissue
- IF H139 Tissue
- IF H140 Tissue
- IF H141 Tissue
- IF H142 Tissue
- IF H143 Tissue
- IF H144 Tissue
- IF H145 Tissue
- IF H146 Tissue
- IF H147 Tissue
- IF H148 Tissue
- IF H149 Tissue
- IF H150 Tissue
- IF H151 Tissue
- IF H152 Tissue
- IF H153 Tissue
- IF H154 Tissue
- IF H155 Tissue
- IF H156 Tissue
- IF H157 Tissue
- IF H158 Tissue
- IF H159 Tissue
- IF H160 Tissue
- IF H161 Tissue
- IF H162 Tissue
- IF H163 Tissue
- IF H164 Tissue
- IF H165 Tissue
- IF H166 Tissue
- IF H167 Tissue
- IF H168 Tissue
- IF H169 Tissue
- IF H170 Tissue
- IF H171 Tissue
- IF H172 Tissue
- IF H173 Tissue
- IF H174 Tissue
- IF H175 Tissue
- IF H176 Tissue
- IF H177 Tissue
- IF H178 Tissue
- IF H179 Tissue
- IF H180 Tissue
- IF H181 Tissue
- IF H182 Tissue
- IF H183 Tissue
- IF H184 Tissue
- IF H185 Tissue
- IF H186 Tissue
- IF H187 Tissue
- IF H188 Tissue
- IF H189 Tissue
- IF H190 Tissue
- IF H191 Tissue
- IF H192 Tissue
- IF H193 Tissue
- IF H194 Tissue
- IF H195 Tissue
- IF H196 Tissue
- IF H197 Tissue
- IF H198 Tissue
- IF H199 Tissue
- IF H200 Tissue
- IF H201 Tissue
- IF H202 Tissue
- IF H203 Tissue
- IF H204 Tissue
- IF H205 Tissue
- IF H206 Tissue
- IF H207 Tissue
- IF H208 Tissue
- IF H209 Tissue
- IF H210 Tissue
- IF H211 Tissue
- IF H212 Tissue
- IF H213 Tissue
- IF H214 Tissue
- IF H215 Tissue
- IF H216 Tissue
- IF H217 Tissue
- IF H218 Tissue
- IF H219 Tissue
- IF H220 Tissue
- IF H221 Tissue
- IF H222 Tissue
- IF H223 Tissue
- IF H224 Tissue
- IF H225 Tissue
- IF H226 Tissue
- IF H227 Tissue
- IF H228 Tissue
- IF H229 Tissue
- IF H230 Tissue
- IF H231 Tissue
- IF H232 Tissue
- IF H233 Tissue
- IF H234 Tissue
- IF H235 Tissue
- IF H236 Tissue
- IF H237 Tissue
- IF H238 Tissue
- IF H239 Tissue
- IF H240 Tissue
- IF H241 Tissue
- IF H242 Tissue
- IF H243 Tissue
- IF H244 Tissue
- IF H245 Tissue
- IF H262 Tissue
- IF H263 Tissue
- IF H264 Tissue
- IF H265 Tissue
- IF H266 Tissue
- IF H267 Tissue
- IF H268 Tissue
- IF H269 Tissue
- IF H270 Tissue
- IF H271 Tissue
- IF H272 Tissue
- IF H273 Tissue
- IF H274 Tissue
- IF H275 Tissue
- IF H276 Tissue
- IF H277 Tissue
- IF H278 Tissue
- IF H279 Tissue
- IF H280 Tissue
- IF H281 Tissue
- IF H282 Tissue
- IF H283 Tissue
- IF H284 Tissue
- IF H285 Tissue
- IF H286 Tissue
- IF H287 Tissue
- IF H288 Tissue
- IF H289 Tissue
- IF H290 Tissue
- IF H291 Tissue
- IF H292 Tissue
- IF H62 Tissue
- IF H63 Tissue
- IF H64 Tissue
- IF H65 Tissue
- IF H66 Tissue
- IF H67 Tissue
- IF H68 Tissue
- IF H69 Tissue
- IF H70 Tissue
- IF H71 Tissue
- IF H72 Tissue
- IF H73 Tissue
- IF H74 Tissue
- IF H75 Tissue
- IF H76 Tissue
- IF H77 Tissue
- IF H78 Tissue
- IF H79 Tissue
- IF H80 Tissue
- IF H81 Tissue
- IF H82 Tissue
- IF H83 Tissue
- IF H84 Tissue
- IF H85 Tissue
- IF H86 Tissue
- IF H87 Tissue
- IF H88 Tissue
- IF H89 Tissue
- IF H90 Tissue
- IF H91 Tissue
- IF H92 Tissue
- IF H93 Tissue
- IF H94 Tissue
- IF H95 Tissue
- IF H96 Tissue
- IF H97 Tissue
- IF H98 Tissue
- IF H99 Tissue
- archipelago ENVO 00...
- coral metagenome
- coral reef ENVO 000...
- laboratory environm...
- land tied island EN...
- sea water ENVO 0000...
- seawater metagenome
Provenance | |
---|---|
Instrument | Illumina iSeq 100; NextSeq 2000; ILLUMINA |
Publisher | Blue-Cloud Data Discovery & Access service; ELIXIR-ENA |
Contributor | Woods Hole Oceanographic Institution |
Publication Year | 2024 |
OpenAccess | true |
Contact | blue-cloud-support(at)maris.nl |
Representation | |
---|---|
Discipline | Marine Science |
Spatial Coverage | (-82.931W, 24.252S, -80.163E, 25.386N) |
Temporal Coverage Begin | 2019-06-05T00:00:00Z |
Temporal Coverage End | 2021-01-01T00:00:00Z |