RNA-seq data for Radix balthica embryos at different developmental stages and in the presence or absence of predator kairomone.

Radix balthica were cultured in the presence or absence of predatory fish kariomone (Tincus tincus), from the first cell division up until either, first heart function, or first crawling activity. At this stage 150 embryos were pooled to create each of three samples per treatment group. RNA was extracted and sequenced (GenePool, Edinburgh University, UK - NBAF698) using both 24 M paired-end reads of 250 BP Miseq2(for transcriptome assembly) and 150 M 50 BP HiSeq SE (quantification). Data were trimmed to remove poor quality bases (<30) and adapters, using cut adapt. Trinity was then applied to the MiSeq data to assemble a transcriptome from which subsequent analysis will be performed.

Identifier
Source https://data.blue-cloud.org/search-details?step=~0124484A643EB7886C606583B6AD7B99A6024B88550
Metadata Access https://data.blue-cloud.org/api/collections/4484A643EB7886C606583B6AD7B99A6024B88550
Provenance
Instrument Illumina MiSeq; Illumina HiSeq 2000; ILLUMINA
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Temporal Coverage Begin 2015-06-03T00:00:00Z
Temporal Coverage End 2018-06-25T00:00:00Z