The results of EICP (Enzyme Induced Calcite Precipitation) experiments. This dataset includes pressure measurements and 3D reconstructed X-ray images during the conducted experiments. The experiment was performed on two Borosillicates Glass beads Columns (BGC). The images were taken with so called "Low-dose" strategy by minimizing the exposure time and projection acquisition in order to boost data acquisition time (6 min / dataset). Later, the low quality of acquired images affected by adopted strategy was enhanced by ML algorithm. The codes which were used for the post-processing in order to enhance the image quality can be found at https://doi.org/10.18419/darus-2991. The image data was recorded at the time steps 1, 2, 4, 6, 8, 10 and 12 hours of EICP experiment.