High density genotyping dataset associated to the paper entitled « The genetic history of Mayotte and Madagascar cattle breeds mirrors the complex pattern of human exchanges in Western Indian Ocean » (Magnier et al., 2022)

DOI

This dataset consists of genotypes of 528 animals belonging to 13 cattle populations for 680338 variants (SNPs) in plink format. The compressed archive contains two files: (i) a genotyping data file named "cattle_680338variants_528individuals_12.ped" (528 rows, 1360682 columns) that contains, for each individual, six information columns (breed ID, animal ID and four columns with data coded 0 or -9) and the genotypes (alleles 1 and 2) for the 680338 SNPs ; and (ii) a map file named "cattle_680338variants_528individuals_12.map" (680338 rows, 4 columns) that contains for each SNP, the autosome number, the SNP name, a column with data coded 0 and the SNP position on autosome.

Identifier
DOI https://doi.org/10.15454/IQL6GE
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.15454/IQL6GE
Provenance
Creator Flori, Laurence ORCID logo
Publisher Recherche Data Gouv
Contributor Flori, Laurence
Publication Year 2022
Funding Reference EU-funded FORWARD RITA DEFI-ANIMAL ; INRAE, AIP Bioressources SELTRYP ; INRAE, Animal Genetics Division PERSAFRICA
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Flori, Laurence (INRAE)
Representation
Resource Type Dataset
Format application/x-xz
Size 65790928
Version 1.0
Discipline Agriculture, Forestry, Horticulture; Agricultural Sciences; Agriculture, Forestry, Horticulture, Aquaculture; Agriculture, Forestry, Horticulture, Aquaculture and Veterinary Medicine; Life Sciences