This repository contains data linked to the publication: Sequence-based genome-wide association studies reveal the polygenic architecture of Varroa destructor resistance in Western honey bees Apis mellifera by SE Eynard, F Mondet, B Basso, O Bouchez, T Bulach, Y Le Conte, B Dainat, A Decourtye, L Genestout, M Guichard, F Guillaume, E Labarthe, B Locke, R Mahla, J de Miranda, M Neuditschko, F Phocas, Y Poquet, C Sann, RF Serre, K Tabet, A Vignal and B Servin [Preprint] (2024). https://doi.org/10.1101/2024.02.16.580755. It includes a file summarising the sequence availability on SRA, the phenotypes, the 'count' files produced using popoolation 2 from mpileup files, the summary statistics from the GWAS analysis performed for a unique population and phenotype using GEMMA and the fixed version, 15/03/2024, of the scripts available on GitHub (https://github.com/seynard/gwas_beestrong)